Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth R]SCOP2B SuperfamilySushi/CCP/SCR domain8044485 3000902 SCOP2B (2022-06-29)
A [auth R]SCOP2B SuperfamilySushi/CCP/SCR domain8044483 3000902 SCOP2B (2022-06-29)
D [auth 3]SCOP2 FamilyPicornaviridae-like VP (VP1 VP2 VP3 and VP4)8068003 4003466 SCOP2 (2022-06-29)
D [auth 3]SCOP2 SuperfamilyPositive stranded ssRNA viruses-like8068004 3000918 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth R]PF00084e1m11R4 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: Complement control module/SCR domainF: PF00084ECOD (1.6)
B [auth 1]PF22663e1m1111 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF22663ECOD (1.6)
C [auth 2]PF00073e1m1121 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)
D [auth 3]PF00073e1m1131 A: beta sandwichesX: jelly-rollH: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)T: Nucleoplasmin-like/VP (viral coat and capsid proteins)F: PF00073ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth R]PF00084Sushi repeat (SCR repeat) (Sushi)Sushi repeat (SCR repeat)- Domain
B [auth 1]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
C [auth 2]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
D [auth 3]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth R]decay-accelerating factor
B [auth 1]COAT PROTEIN VP1
C [auth 2]COAT PROTEIN VP2
D [auth 3]COAT PROTEIN VP3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth R]IPR000436Sushi/SCR/CCP domainDomain
A [auth R]IPR035976Sushi/SCR/CCP superfamilyHomologous Superfamily
B [auth 1]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth 1]IPR002527Picornavirus 2B proteinDomain
B [auth 1]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth 1]IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
B [auth 1]IPR003593AAA+ ATPase domainDomain
B [auth 1]IPR003138Picornavirus coat protein VP4Family
B [auth 1]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth 1]IPR001676Picornavirus capsidDomain
B [auth 1]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth 1]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 1]IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth 1]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth 1]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth 1]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth 1]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth 1]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth 1]IPR014838Poliovirus 3A protein-likeDomain
B [auth 1]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth 1]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth 1]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth 1]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth 2]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth 2]IPR002527Picornavirus 2B proteinDomain
C [auth 2]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth 2]IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
C [auth 2]IPR003593AAA+ ATPase domainDomain
C [auth 2]IPR003138Picornavirus coat protein VP4Family
C [auth 2]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth 2]IPR001676Picornavirus capsidDomain
C [auth 2]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth 2]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 2]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth 2]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth 2]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth 2]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth 2]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth 2]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth 2]IPR014838Poliovirus 3A protein-likeDomain
C [auth 2]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth 2]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth 2]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth 2]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
D [auth 3]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
D [auth 3]IPR002527Picornavirus 2B proteinDomain
D [auth 3]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
D [auth 3]IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
D [auth 3]IPR003593AAA+ ATPase domainDomain
D [auth 3]IPR003138Picornavirus coat protein VP4Family
D [auth 3]IPR000199Peptidase C3A/C3B, picornaviralDomain
D [auth 3]IPR001676Picornavirus capsidDomain
D [auth 3]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
D [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 3]IPR000081Peptidase C3, picornavirus core protein 2ADomain
D [auth 3]IPR029053Viral coat protein subunitHomologous Superfamily
D [auth 3]IPR009003Peptidase S1, PA clanHomologous Superfamily
D [auth 3]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
D [auth 3]IPR044067Picornavirales 3C/3C-like protease domainDomain
D [auth 3]IPR033703Picornavirus/Calicivirus coat proteinDomain
D [auth 3]IPR014838Poliovirus 3A protein-likeDomain
D [auth 3]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
D [auth 3]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
D [auth 3]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
D [auth 3]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain