6RHF

Structure of Chloroflexus aggregans Cagg_3753 LOV domain C85A variant (CagFbFP)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP295200 mM Ammonium citrate dibasic, 20% (w/v) PEG 3350
Crystal Properties
Matthew coefficientSolvent content
2.3247.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.934α = 90
b = 110.044β = 90
c = 38.945γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2017-10-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.9724ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.0748.4399.60.0660.0740.0310.9989.65.3102522
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.071.0997.82.062.3021.0020.2935

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.0748.4397254519599.430.12590.12470.1484RANDOM18.487
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.19-0.2
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free34.542
r_dihedral_angle_2_deg34.362
r_dihedral_angle_4_deg20.221
r_sphericity_bonded13.72
r_dihedral_angle_3_deg10.333
r_dihedral_angle_1_deg6.788
r_rigid_bond_restr5.487
r_angle_refined_deg2.044
r_angle_other_deg1.011
r_chiral_restr0.137
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free34.542
r_dihedral_angle_2_deg34.362
r_dihedral_angle_4_deg20.221
r_sphericity_bonded13.72
r_dihedral_angle_3_deg10.333
r_dihedral_angle_1_deg6.788
r_rigid_bond_restr5.487
r_angle_refined_deg2.044
r_angle_other_deg1.011
r_chiral_restr0.137
r_bond_refined_d0.021
r_gen_planes_refined0.014
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1607
Nucleic Acid Atoms
Solvent Atoms307
Heterogen Atoms86

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
MOLREPphasing