Map Genomic Position to Protein Sequence and 3D Structure


This analysis tool highlights the location of a gene position of the human genome on protein sequence and 3D structure.  

Note: For looking up gene names, please use the top-bar search (example: BRCA1).

Chromosome chr1 : 31,261,529

SNRNP40 - 1p35.2

small nuclear ribonucleoprotein U5 subunit 40

Locus: 1p35.2Orientation: -
View position on Gene View: SNRNP40
Position in mRNA: 1024 (phase: 0)
View position 342 on canonical UniProt sequence: Q96DI7 Residue: I
Mapping to 3D protein structure
3D PDB ID Chain ID PDB position UniProt Isoform Image
 Show in 3D 6QDV N 342 1 (canonical sequence)
Mapping to Pathway Maps for Q96DI7
      ESCHER  BiGG
Please cite:

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
A Prlić, T Kalro, R Bhattacharya, C Christie, SK Burley, PW Rose
Bioinformatics, btw547