Map Genomic Position to Protein Sequence and 3D Structure

 

This analysis tool highlights the location of a gene position of the human genome on protein sequence and 3D structure.  

Note: For looking up gene names, please use the top-bar search (example: BRCA1).
 

Chromosome chr1 : 38,005,758


SNIP1 - 1p34.3

Smad nuclear interacting protein 1

Locus: 1p34.3Orientation: -
View position on Gene View: SNIP1
Position in mRNA: 926 (phase: 1)
View position 309 on canonical UniProt sequence: Q8TAD8 Residue: R
Mapping to 3D protein structure
3D PDB ID Chain ID PDB position UniProt Isoform Image
 Show in 3D 5Z56 X 309 1 (canonical sequence)
Mapping to Pathway Maps for Q8TAD8
Maps:       
Reactions:
      ESCHER  BiGG
Please cite:

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
A Prlić, T Kalro, R Bhattacharya, C Christie, SK Burley, PW Rose
Bioinformatics, btw547