Map Genomic Position to Protein Sequence and 3D Structure

 

This analysis tool highlights the location of a gene position of the human genome on protein sequence and 3D structure.  

Note: For looking up gene names, please use the top-bar search (example: BRCA1).
 

Chromosome chr20 : 20,022,210

CRNKL1 - 20p11.23

crooked neck pre-mRNA splicing factor 1

Locus: 20p11.23Orientation: -
View position on Gene View: CRNKL1
Position in mRNA: 1224 (phase: 2)
UniProt mapping via isoform 2 (position on isoform:408)
View position 569 on canonical UniProt sequence: Q9BZJ0 Residue: K
Mapping to 3D protein structure
3D PDB ID Chain ID PDB position UniProt Isoform Image
 Show in 3D 6QDV S 569 2
Mapping to Pathway Maps for Q9BZJ0
Maps:       
Reactions:
      ESCHER  BiGG
Please cite:

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
A Prlić, T Kalro, R Bhattacharya, C Christie, SK Burley, PW Rose
Bioinformatics, btw547