Map Genomic Position to Protein Sequence and 3D Structure

 

This analysis tool highlights the location of a gene position of the human genome on protein sequence and 3D structure.  

Note: For looking up gene names, please use the top-bar search (example: BRCA1).
 

Chromosome chr3 : 184,021,108


PSMD2 - 3q27.1

proteasome 26S subunit, non-ATPase 2

Locus: 3q27.1Orientation: +
View position on Gene View: PSMD2
Position in mRNA: 593 (phase: 1)
UniProt mapping via isoform 2 (position on isoform:198)
View position 357 on canonical UniProt sequence: Q13200 Residue: R
Mapping to 3D protein structure
3D PDB ID Chain ID PDB position UniProt Isoform Image
 Show in 3D 5T0G f 198 2
Mapping to Pathway Maps for Q13200
Maps:       
Reactions:
      ESCHER  BiGG
Please cite:

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
A Prlić, T Kalro, R Bhattacharya, C Christie, SK Burley, PW Rose
Bioinformatics, btw547