1JEW

CRYO-EM STRUCTURE OF COXSACKIEVIRUS B3(M STRAIN) WITH ITS CELLULAR RECEPTOR, COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR (CAR).


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 22.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

Interaction of coxsackievirus B3 with the full length coxsackievirus-adenovirus receptor.

He, Y.Chipman, P.R.Howitt, J.Bator, C.M.Whitt, M.A.Baker, T.S.Kuhn, R.J.Anderson, C.W.Freimuth, P.Rossmann, M.G.

(2001) Nat Struct Biol 8: 874-878

  • DOI: https://doi.org/10.1038/nsb1001-874
  • Primary Citation of Related Structures:  
    1JEW

  • PubMed Abstract: 

    Group B coxsackieviruses (CVB) utilize the coxsackievirus-adenovirus receptor (CAR) to recognize host cells. CAR is a membrane protein with two Ig-like extracellular domains (D1 and D2), a transmembrane domain and a cytoplasmic domain. The three-dimensional structure of coxsackievirus B3 (CVB3) in complex with full length human CAR and also with the D1D2 fragment of CAR were determined to approximately 22 A resolution using cryo-electron microscopy (cryo-EM). Pairs of transmembrane domains of CAR associate with each other in a detergent cloud that mimics a cellular plasma membrane. This is the first view of a virus-receptor interaction at this resolution that includes the transmembrane and cytoplasmic portion of the receptor. CAR binds with the distal end of domain D1 in the canyon of CVB3, similar to how other receptor molecules bind to entero- and rhinoviruses. The previously described interface of CAR with the adenovirus knob protein utilizes a side surface of D1.


  • Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
COXSACKIEVIRUS AND ADENOVIRUS RECEPTORA [auth R]120Homo sapiensMutation(s): 0 
Gene Names: CAR
UniProt & NIH Common Fund Data Resources
Find proteins for P78310 (Homo sapiens)
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Go to UniProtKB:  P78310
PHAROS:  P78310
GTEx:  ENSG00000154639 
Entity Groups  
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UniProt GroupP78310
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP1B [auth 1]281Coxsackievirus B3 (strain Woodruff)Mutation(s): 0 
UniProt
Find proteins for Q66282 (Coxsackievirus B3 (strain Woodruff))
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Go to UniProtKB:  Q66282
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UniProt GroupQ66282
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP2C [auth 2]263Coxsackievirus B3 (strain Woodruff)Mutation(s): 0 
UniProt
Find proteins for Q66282 (Coxsackievirus B3 (strain Woodruff))
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Go to UniProtKB:  Q66282
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UniProt GroupQ66282
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP3D [auth 3]238Coxsackievirus B3 (strain Woodruff)Mutation(s): 0 
UniProt
Find proteins for Q66282 (Coxsackievirus B3 (strain Woodruff))
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Go to UniProtKB:  Q66282
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UniProt GroupQ66282
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
COXSACKIEVIRUS CAPSID, COAT PROTEIN VP4E [auth 4]68Coxsackievirus B3 (strain Woodruff)Mutation(s): 0 
UniProt
Find proteins for Q66282 (Coxsackievirus B3 (strain Woodruff))
Explore Q66282 
Go to UniProtKB:  Q66282
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ66282
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 22.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONPURDUE PROGRAMS

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2001-10-03
    Type: Initial release
  • Version 1.1: 2008-04-27
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2018-07-18
    Changes: Data collection
  • Version 1.4: 2021-03-31
    Changes: Database references, Source and taxonomy
  • Version 1.5: 2024-02-07
    Changes: Data collection, Database references, Derived calculations