5IT7

Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Structural characterization of ribosome recruitment and translocation by type IV IRES.

Murray, J.Savva, C.G.Shin, B.S.Dever, T.E.Ramakrishnan, V.Fernandez, I.S.

(2016) Elife 5

  • DOI: https://doi.org/10.7554/eLife.13567
  • Primary Citation of Related Structures:  
    5IT7, 5IT9

  • PubMed Abstract: 

    Viral mRNA sequences with a type IV IRES are able to initiate translation without any host initiation factors. Initial recruitment of the small ribosomal subunit as well as two translocation steps before the first peptidyl transfer are essential for the initiation of translation by these mRNAs. Using electron cryomicroscopy (cryo-EM) we have structurally characterized at high resolution how the Cricket Paralysis Virus Internal Ribosomal Entry Site (CrPV-IRES) binds the small ribosomal subunit (40S) and the translocation intermediate stabilized by elongation factor 2 (eEF2). The CrPV-IRES restricts tvhe otherwise flexible 40S head to a conformation compatible with binding the large ribosomal subunit (60S). Once the 60S is recruited, the binary CrPV-IRES/80S complex oscillates between canonical and rotated states (Fernández et al., 2014; Koh et al., 2014), as seen for pre-translocation complexes with tRNAs. Elongation factor eEF2 with a GTP analog stabilizes the ribosome-IRES complex in a rotated state with an extra ~3 degrees of rotation. Key residues in domain IV of eEF2 interact with pseudoknot I (PKI) of the CrPV-IRES stabilizing it in a conformation reminiscent of a hybrid tRNA state. The structure explains how diphthamide, a eukaryotic and archaeal specific post-translational modification of a histidine residue of eEF2, is involved in translocation.


  • Organizational Affiliation

    MRC Laboratory of Molecular Biology, Cambridge, United Kingdom.


Macromolecules

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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0D16027pD [auth AA]249Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CQM3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L3E [auth BB]384Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CJR7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0B07139pF [auth CC]360Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CW41 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0D06941pG [auth DD]295Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CRR9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0B04686pH [auth EE]170Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CWE7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0D03410pI [auth FF]222Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CS71 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0E00573pJ [auth GG]233Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for B4UN96 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0F04499pK [auth HH]191Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CLA6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0D05643pL [auth II]216Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CRX7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0F08261pM [auth JJ]168Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CKT4 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13N [auth LL]197Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q875M0 (Kluyveromyces lactis)
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0B13409pO [auth MM]136Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CVB1 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L15P [auth NN]202Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CJL7 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0F04675pQ [auth OO]198Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CL98 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0A06336pR [auth PP]180Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CXQ6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0A07227pS [auth QQ]184Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CXL8 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0E12453pT [auth RR]188Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CNH9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L20U [auth SS]169Kluyveromyces lactisMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0E23651pV [auth TT]158Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CM20 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0D05181pW [auth UU]100Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CRZ8 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0E06997pX [auth VV]132Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CP75 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L24Y [auth WW]62Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for P38665 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L25Z [auth XX]121Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for P48045 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0B05742pAA [auth YY]125Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CW97 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0E03455pBA [auth ZZ]134Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
RPL28CA [auth aa]147Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q8J287 (Kluyveromyces lactis)
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0D16071pDA [auth bb]57Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L30EA [auth cc]97Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for P38664 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0B02937pFA [auth dd]106Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CWM6 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0E06843pGA [auth ee]122Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CP82 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0D07405pHA [auth ff]105Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0C08371pIA [auth gg]121Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0F05247pJA [auth hh]116Kluyveromyces lactisMutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36KA [auth ii]98Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CR18 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37LA [auth jj]85Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0C18216pMA [auth kk]76Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CSS8 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39NA [auth ll]49Saccharomyces cerevisiae S288CMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin fusion proteinOA [auth mm]51Kluyveromyces lactisMutation(s): 0 
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Find proteins for Q9Y854 (Kluyveromyces lactis)
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41-APA [auth nn]25Saccharomyces cerevisiae S288CMutation(s): 0 
UniProt
Find proteins for P0CX86 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L44QA [auth oo]101Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for P31027 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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UniProt GroupP31027
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0E05941pRA [auth pp]87Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal proteinSA [auth qq]217Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CWR9 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
60S acidic ribosomal protein P0TA [auth rr]195Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CW89 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
uL11UA [auth KK]147Kluyveromyces lactisMutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S0VA [auth A]206Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CN12 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S1WA [auth B]214Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CWD0 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0F09812pXA [auth C]217Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CKL3 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0D08305pYA [auth D]223Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4ZA [auth E]260Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0D10659pAB [auth F]206Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6BB [auth G]226Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0C13519pCB [auth H]184Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8DB [auth I]200Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0E23673pEB [auth J]182Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0B08173pFB [auth K]96Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0A10483pGB [auth L]155Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12HB [auth M]122Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0F18040pIB [auth N]150Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S14JB [auth O]127Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0F07843pKB [auth P]123Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S16LB [auth Q]141Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0B01474pMB [auth R]129Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0B01562pNB [auth S]145Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0A07194pOB [auth T]143Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0F25542pPB [auth U]106Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21QB [auth V]87Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S22RB [auth W]129Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
RPS23SB [auth X]145Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24TB [auth Y]134Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for Q6CU44 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0B06182pUB [auth Z]70Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0D05115pVB [auth a]100Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27WB [auth b]82Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S28XB [auth c]63Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S29YB [auth d]53Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0C04809pZB [auth e]55Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S27aAC [auth f]69Kluyveromyces lactisMutation(s): 0 
UniProt
Find proteins for P69061 (Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37))
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
KLLA0E12277pBC [auth g]324Kluyveromyces lactisMutation(s): 0 
UniProt
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
Eft2pEC [auth 1]827Saccharomyces cerevisiae P283Mutation(s): 0 
Gene Names: Eft2P283_D20866
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Entity ID: 1
MoleculeChains LengthOrganismImage
25S ribosomal RNAA [auth 5]3,270Kluyveromyces lactis
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Entity ID: 2
MoleculeChains LengthOrganismImage
5S ribosomal RNAB [auth 7]121Kluyveromyces lactis
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Entity ID: 3
MoleculeChains LengthOrganismImage
5.8S ribosomal RNAC [auth 8]157Kluyveromyces lactis
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Entity ID: 81
MoleculeChains LengthOrganismImage
18S ribosomal RNACC [auth 2]1,798Kluyveromyces lactis
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Entity ID: 82
MoleculeChains LengthOrganismImage
cricket paralysis virus IRESDC [auth 4]190Cricket paralysis virus
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Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GCP
Query on GCP

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NF [auth 1]PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
C11 H18 N5 O13 P3
PHBDHXOBFUBCJD-KQYNXXCUSA-N
6EM
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OF [auth 1](2S)-1-amino-N,N,N-trimethyl-1-oxobutan-2-aminium
C7 H17 N2 O
LPOFDMFKBRMZLU-LURJTMIESA-O
ZN
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HC [auth jj]
IC [auth mm]
JC [auth oo]
LC [auth a]
MC [auth b]
HC [auth jj],
IC [auth mm],
JC [auth oo],
LC [auth a],
MC [auth b],
NC [auth f]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
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AD [auth 2]
AE [auth 2]
AF [auth 2]
BD [auth 2]
BE [auth 2]
AD [auth 2],
AE [auth 2],
AF [auth 2],
BD [auth 2],
BE [auth 2],
BF [auth 2],
CD [auth 2],
CE [auth 2],
CF [auth 2],
DD [auth 2],
DE [auth 2],
DF [auth 2],
ED [auth 2],
EE [auth 2],
EF [auth 2],
FC [auth 5],
FD [auth 2],
FE [auth 2],
FF [auth 2],
GC [auth 5],
GD [auth 2],
GE [auth 2],
GF [auth 2],
HD [auth 2],
HE [auth 2],
HF [auth 2],
ID [auth 2],
IE [auth 2],
IF [auth 2],
JD [auth 2],
JE [auth 2],
JF [auth 2],
KC [auth N],
KD [auth 2],
KE [auth 2],
KF [auth 2],
LD [auth 2],
LE [auth 2],
LF [auth 2],
MD [auth 2],
ME [auth 2],
MF [auth 1],
ND [auth 2],
NE [auth 2],
OC [auth f],
OD [auth 2],
OE [auth 2],
PC [auth 2],
PD [auth 2],
PE [auth 2],
QC [auth 2],
QD [auth 2],
QE [auth 2],
RC [auth 2],
RD [auth 2],
RE [auth 2],
SC [auth 2],
SD [auth 2],
SE [auth 2],
TC [auth 2],
TD [auth 2],
TE [auth 2],
UC [auth 2],
UD [auth 2],
UE [auth 2],
VC [auth 2],
VD [auth 2],
VE [auth 2],
WC [auth 2],
WD [auth 2],
WE [auth 2],
XC [auth 2],
XD [auth 2],
XE [auth 2],
YC [auth 2],
YD [auth 2],
YE [auth 2],
ZC [auth 2],
ZD [auth 2],
ZE [auth 2]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC5.8

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMC_U105184332
Wellcome TrustUnited KingdomWT096570
National Institutes of HealthUnited StatesIntramural Research Program

Revision History  (Full details and data files)

  • Version 1.0: 2016-05-18
    Type: Initial release
  • Version 1.1: 2017-08-02
    Changes: Data collection, Derived calculations
  • Version 1.2: 2018-03-28
    Changes: Advisory
  • Version 1.3: 2018-10-24
    Changes: Advisory, Data collection, Derived calculations
  • Version 1.4: 2018-11-21
    Changes: Advisory, Data collection, Derived calculations