5LZS

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.31 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 2.2 of the entry. See complete history


Literature

Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes.

Shao, S.Murray, J.Brown, A.Taunton, J.Ramakrishnan, V.Hegde, R.S.

(2016) Cell 167: 1229-1240.e15

  • DOI: https://doi.org/10.1016/j.cell.2016.10.046
  • Primary Citation of Related Structures:  
    5LZS, 5LZT, 5LZU, 5LZV, 5LZW, 5LZX, 5LZY, 5LZZ

  • PubMed Abstract: 

    In eukaryotes, accurate protein synthesis relies on a family of translational GTPases that pair with specific decoding factors to decipher the mRNA code on ribosomes. We present structures of the mammalian ribosome engaged with decoding factor⋅GTPase complexes representing intermediates of translation elongation (aminoacyl-tRNA⋅eEF1A), termination (eRF1⋅eRF3), and ribosome rescue (Pelota⋅Hbs1l). Comparative analyses reveal that each decoding factor exploits the plasticity of the ribosomal decoding center to differentially remodel ribosomal proteins and rRNA. This leads to varying degrees of large-scale ribosome movements and implies distinct mechanisms for communicating information from the decoding center to each GTPase. Additional structural snapshots of the translation termination pathway reveal the conformational changes that choreograph the accommodation of decoding factors into the peptidyl transferase center. Our results provide a structural framework for how different states of the mammalian ribosome are selectively recognized by the appropriate decoding factor⋅GTPase complex to ensure translational fidelity.


  • Organizational Affiliation

    MRC-LMB, Francis Crick Avenue, Cambridge CB2 0QH, UK.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
uL2257Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1TT27 (Oryctolagus cuniculus)
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
uL3403Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1TL06 (Oryctolagus cuniculus)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
uL4425Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SVW5 (Oryctolagus cuniculus)
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L5297Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SYJ6 (Oryctolagus cuniculus)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6291Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
uL30247Oryctolagus cuniculusMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
eL8319Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1STW0 (Oryctolagus cuniculus)
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
uL6192Oryctolagus cuniculusMutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L10 (Predicted)214Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for B7NZQ2 (Oryctolagus cuniculus)
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
uL5178Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TUB8 (Oryctolagus cuniculus)
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
eL13K [auth L]211Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
eL14L [auth M]218Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SZ12 (Oryctolagus cuniculus)
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L15M [auth N]204Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1T0C1 (Oryctolagus cuniculus)
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
uL13N [auth O]203Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
uL22O [auth P]184Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1TVT6 (Oryctolagus cuniculus)
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
eL18P [auth Q]188Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
eL19Q [auth R]196Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
eL20R [auth S]176Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
eL21S [auth T]160Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SHQ2 (Oryctolagus cuniculus)
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
eL22T [auth U]128Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
uL14U [auth V]140Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1T6D1 (Oryctolagus cuniculus)
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
uL24V [auth W]157Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SE28 (Oryctolagus cuniculus)
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
uL23W [auth X]156Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SE76 (Oryctolagus cuniculus)
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
uL24X [auth Y]145Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SQH0 (Oryctolagus cuniculus)
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27Y [auth Z]136Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TXF6 (Oryctolagus cuniculus)
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
uL15Z [auth a]148Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SNY0 (Oryctolagus cuniculus)
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
eL29AA [auth b]245Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SGR6 (Oryctolagus cuniculus)
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
eL30BA [auth c]115Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1TDL2 (Oryctolagus cuniculus)
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
eL31CA [auth d]125Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SHG0 (Oryctolagus cuniculus)
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
eL32DA [auth e]135Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1U437 (Oryctolagus cuniculus)
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
eL33EA [auth f]110Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SF08 (Oryctolagus cuniculus)
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
eL34FA [auth g]116Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1U945 (Oryctolagus cuniculus)
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
uL29GA [auth h]123Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SIT5 (Oryctolagus cuniculus)
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36HA [auth i]105Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TTQ5 (Oryctolagus cuniculus)
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37IA [auth j]97Oryctolagus cuniculusMutation(s): 0 
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Find proteins for U3KPD5 (Oryctolagus cuniculus)
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
eL38JA [auth k]70Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
eL39KA [auth l]51Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
eL40LA [auth m]102Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60s ribosomal protein l41MA [auth n]25Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
eL42NA [auth o]106Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1U344 (Oryctolagus cuniculus)
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
eL43OA [auth p]92Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1SY53 (Oryctolagus cuniculus)
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
eL28PA [auth r]137Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1U7L1 (Oryctolagus cuniculus)
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
uL10QA [auth s]318Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
uL11RA [auth t]165Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SMR7 (Oryctolagus cuniculus)
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
uS2YA [auth AA]295Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aZA [auth BB]264Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
uS5AB [auth CC]293Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
uS4BB [auth DD]243Oryctolagus cuniculusMutation(s): 0 
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Find proteins for G1TNM3 (Oryctolagus cuniculus)
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4CB [auth EE]263Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized proteinDB [auth FF]204Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TFM5 (Oryctolagus cuniculus)
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6EB [auth GG]249Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
uS7FB [auth HH]194Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8GB [auth II]208Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S9 (Predicted)HB [auth JJ]194Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
eS10IB [auth KK]165Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
uS17JB [auth LL]158Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12KB [auth MM]132Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
uS15LB [auth NN]151Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
uS11MB [auth OO]168Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
uS19NB [auth PP]145Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
uS9OB [auth QQ]146Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
eS17PB [auth RR]135Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
uS13QB [auth SS]152Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
eS19RB [auth TT]145Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
uS10SB [auth UU]119Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
eS21TB [auth VV]83Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
uS8UB [auth WW]130Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
uS12VB [auth XX]143Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
eS24WB [auth YY]130Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
eS25XB [auth ZZ]125Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
eS26YB [auth aa]115Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27ZB [auth bb]84Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
eS28AC [auth cc]69Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
uS14BC [auth dd]56Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
eS30CC [auth ee]133Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 82
MoleculeChains Sequence LengthOrganismDetailsImage
eS31DC [auth ff]156Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
RACK1EC [auth gg]317Oryctolagus cuniculusMutation(s): 0 
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Entity ID: 85
MoleculeChains Sequence LengthOrganismDetailsImage
Elongation factor 1-alpha 1HC [auth jj]462Oryctolagus cuniculusMutation(s): 0 
UniProt
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Entity ID: 45
MoleculeChains LengthOrganismImage
tRNAGC [auth ii],
SA [auth 2]
76Oryctolagus cuniculus
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Entity ID: 46
MoleculeChains LengthOrganismImage
E-site tRNATA [auth 3]75Oryctolagus cuniculus
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Entity ID: 47
MoleculeChains LengthOrganismImage
28S ribosomal RNAUA [auth 5]3,543Oryctolagus cuniculus
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Entity ID: 48
MoleculeChains LengthOrganismImage
5S ribosomal RNAVA [auth 7]120Oryctolagus cuniculus
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Entity ID: 49
MoleculeChains LengthOrganismImage
5.8S ribosomal RNAWA [auth 8]156Oryctolagus cuniculus
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Entity ID: 50
MoleculeChains LengthOrganismImage
18S ribosomal RNAXA [auth 9]1,869Oryctolagus cuniculus
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Entity ID: 84
MoleculeChains LengthOrganismImage
mRNAFC [auth hh]10Oryctolagus cuniculus
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Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
7C4
Query on 7C4

Download Ideal Coordinates CCD File 
HN [auth jj](2~{S})-~{N}-[(2~{R})-1-[[(3~{S},6~{S},8~{S},12~{S},13~{R},16~{S},17~{R},20~{S},23~{S})-13-[(2~{S})-butan-2-yl]-20-[(4-methoxyphenyl)methyl]-6,17,21-trimethyl-3-(2-methylpropyl)-12-oxidanyl-2,5,7,10,15,19,22-heptakis(oxidanylidene)-8-propan-2-yl-9,18-dioxa-1,4,14,21-tetrazabicyclo[21.3.0]hexacosan-16-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-~{N}-methyl-1-[(2~{S})-2-oxidanylpropanoyl]pyrrolidine-2-carboxamide
C57 H89 N7 O15
KYHUYMLIVQFXRI-SJPGYWQQSA-N
GDP
Query on GDP

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FN [auth jj]GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
ZN
Query on ZN

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CN [auth aa]
DN [auth dd]
EN [auth ff]
PC [auth g]
RC [auth j]
CN [auth aa],
DN [auth dd],
EN [auth ff],
PC [auth g],
RC [auth j],
TC [auth m],
UC [auth o],
VC [auth p]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

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AD [auth 5]
AE [auth 5]
AF [auth 5]
AG [auth 5]
AH [auth 5]
AD [auth 5],
AE [auth 5],
AF [auth 5],
AG [auth 5],
AH [auth 5],
AI [auth 5],
AJ [auth 5],
AK [auth 7],
AL [auth 9],
AM [auth 9],
AN [auth 9],
BD [auth 5],
BE [auth 5],
BF [auth 5],
BG [auth 5],
BH [auth 5],
BI [auth 5],
BJ [auth 5],
BK [auth 7],
BL [auth 9],
BM [auth 9],
BN [auth aa],
CD [auth 5],
CE [auth 5],
CF [auth 5],
CG [auth 5],
CH [auth 5],
CI [auth 5],
CJ [auth 5],
CK [auth 7],
CL [auth 9],
CM [auth 9],
DD [auth 5],
DE [auth 5],
DF [auth 5],
DG [auth 5],
DH [auth 5],
DI [auth 5],
DJ [auth 5],
DK [auth 7],
DL [auth 9],
DM [auth 9],
ED [auth 5],
EE [auth 5],
EF [auth 5],
EG [auth 5],
EH [auth 5],
EI [auth 5],
EJ [auth 5],
EK [auth 7],
EL [auth 9],
EM [auth 9],
FD [auth 5],
FE [auth 5],
FF [auth 5],
FG [auth 5],
FH [auth 5],
FI [auth 5],
FJ [auth 5],
FK [auth 8],
FL [auth 9],
FM [auth 9],
GD [auth 5],
GE [auth 5],
GF [auth 5],
GG [auth 5],
GH [auth 5],
GI [auth 5],
GJ [auth 5],
GK [auth 8],
GL [auth 9],
GM [auth 9],
GN [auth jj],
HD [auth 5],
HE [auth 5],
HF [auth 5],
HG [auth 5],
HH [auth 5],
HI [auth 5],
HJ [auth 5],
HK [auth 8],
HL [auth 9],
HM [auth 9],
IC [auth B],
ID [auth 5],
IE [auth 5],
IF [auth 5],
IG [auth 5],
IH [auth 5],
II [auth 5],
IJ [auth 5],
IK [auth 8],
IL [auth 9],
IM [auth 9],
JC [auth I],
JD [auth 5],
JE [auth 5],
JF [auth 5],
JG [auth 5],
JH [auth 5],
JI [auth 5],
JJ [auth 5],
JK [auth 8],
JL [auth 9],
JM [auth 9],
KC [auth P],
KD [auth 5],
KE [auth 5],
KF [auth 5],
KG [auth 5],
KH [auth 5],
KI [auth 5],
KJ [auth 5],
KK [auth 9],
KL [auth 9],
KM [auth 9],
LC [auth Q],
LD [auth 5],
LE [auth 5],
LF [auth 5],
LG [auth 5],
LH [auth 5],
LI [auth 5],
LJ [auth 5],
LK [auth 9],
LL [auth 9],
LM [auth 9],
MC [auth V],
MD [auth 5],
ME [auth 5],
MF [auth 5],
MG [auth 5],
MH [auth 5],
MI [auth 5],
MJ [auth 5],
MK [auth 9],
ML [auth 9],
MM [auth 9],
NC [auth a],
ND [auth 5],
NE [auth 5],
NF [auth 5],
NG [auth 5],
NH [auth 5],
NI [auth 5],
NJ [auth 5],
NK [auth 9],
NL [auth 9],
NM [auth 9],
OC [auth a],
OD [auth 5],
OE [auth 5],
OF [auth 5],
OG [auth 5],
OH [auth 5],
OI [auth 5],
OJ [auth 5],
OK [auth 9],
OL [auth 9],
OM [auth 9],
PD [auth 5],
PE [auth 5],
PF [auth 5],
PG [auth 5],
PH [auth 5],
PI [auth 5],
PJ [auth 5],
PK [auth 9],
PL [auth 9],
PM [auth 9],
QC [auth g],
QD [auth 5],
QE [auth 5],
QF [auth 5],
QG [auth 5],
QH [auth 5],
QI [auth 5],
QJ [auth 5],
QK [auth 9],
QL [auth 9],
QM [auth 9],
RD [auth 5],
RE [auth 5],
RF [auth 5],
RG [auth 5],
RH [auth 5],
RI [auth 5],
RJ [auth 5],
RK [auth 9],
RL [auth 9],
RM [auth 9],
SC [auth j],
SD [auth 5],
SE [auth 5],
SF [auth 5],
SG [auth 5],
SH [auth 5],
SI [auth 5],
SJ [auth 5],
SK [auth 9],
SL [auth 9],
SM [auth 9],
TD [auth 5],
TE [auth 5],
TF [auth 5],
TG [auth 5],
TH [auth 5],
TI [auth 5],
TJ [auth 5],
TK [auth 9],
TL [auth 9],
TM [auth 9],
UD [auth 5],
UE [auth 5],
UF [auth 5],
UG [auth 5],
UH [auth 5],
UI [auth 5],
UJ [auth 5],
UK [auth 9],
UL [auth 9],
UM [auth 9],
VD [auth 5],
VE [auth 5],
VF [auth 5],
VG [auth 5],
VH [auth 5],
VI [auth 5],
VJ [auth 5],
VK [auth 9],
VL [auth 9],
VM [auth 9],
WC [auth 5],
WD [auth 5],
WE [auth 5],
WF [auth 5],
WG [auth 5],
WH [auth 5],
WI [auth 5],
WJ [auth 5],
WK [auth 9],
WL [auth 9],
WM [auth 9],
XC [auth 5],
XD [auth 5],
XE [auth 5],
XF [auth 5],
XG [auth 5],
XH [auth 5],
XI [auth 5],
XJ [auth 5],
XK [auth 9],
XL [auth 9],
XM [auth 9],
YC [auth 5],
YD [auth 5],
YE [auth 5],
YF [auth 5],
YG [auth 5],
YH [auth 5],
YI [auth 5],
YJ [auth 5],
YK [auth 9],
YL [auth 9],
YM [auth 9],
ZC [auth 5],
ZD [auth 5],
ZE [auth 5],
ZF [auth 5],
ZG [auth 5],
ZH [auth 5],
ZI [auth 5],
ZJ [auth 7],
ZK [auth 9],
ZL [auth 9],
ZM [auth 9]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
SEP
Query on SEP
HC [auth jj]L-PEPTIDE LINKINGC3 H8 N O6 PSER
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.31 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION1.4
MODEL REFINEMENTREFMAC5.8

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMC_UP_A022_1007
Medical Research Council (United Kingdom)United KingdomMC_U105184332
Wellcome TrustUnited KingdomWT096570

Revision History  (Full details and data files)

  • Version 1.0: 2016-11-30
    Type: Initial release
  • Version 2.0: 2017-08-30
    Changes: Atomic model, Author supporting evidence, Data collection, Derived calculations
  • Version 2.1: 2018-10-17
    Changes: Data collection, Refinement description, Structure summary
  • Version 2.2: 2019-12-11
    Changes: Advisory, Derived calculations, Other