6T59

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.11 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

TTC5 mediates autoregulation of tubulin via mRNA degradation.

Lin, Z.Gasic, I.Chandrasekaran, V.Peters, N.Shao, S.Mitchison, T.J.Hegde, R.S.

(2020) Science 367: 100-104

  • DOI: https://doi.org/10.1126/science.aaz4352
  • Primary Citation of Related Structures:  
    6T59

  • PubMed Abstract: 

    Tubulins play crucial roles in cell division, intracellular traffic, and cell shape. Tubulin concentration is autoregulated by feedback control of messenger RNA (mRNA) degradation via an unknown mechanism. We identified tetratricopeptide protein 5 (TTC5) as a tubulin-specific ribosome-associating factor that triggers cotranslational degradation of tubulin mRNAs in response to excess soluble tubulin. Structural analysis revealed that TTC5 binds near the ribosome exit tunnel and engages the amino terminus of nascent tubulins. TTC5 mutants incapable of ribosome or nascent tubulin interaction abolished tubulin autoregulation and showed chromosome segregation defects during mitosis. Our findings show how a subset of mRNAs can be targeted for coordinated degradation by a specificity factor that recognizes the nascent polypeptides they encode.


  • Organizational Affiliation

    MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK.


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L8A [auth A3]257Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TT27 (Oryctolagus cuniculus)
Explore G1TT27 
Go to UniProtKB:  G1TT27
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1TT27
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
uL3B [auth B3]403Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TL06 (Oryctolagus cuniculus)
Explore G1TL06 
Go to UniProtKB:  G1TL06
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1TL06
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
uL4C [auth C3]425Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L5D [auth D3]297Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SYJ6 (Oryctolagus cuniculus)
Explore G1SYJ6 
Go to UniProtKB:  G1SYJ6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SYJ6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6E [auth E3]291Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SKF7 (Oryctolagus cuniculus)
Explore G1SKF7 
Go to UniProtKB:  G1SKF7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SKF7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Ul30F [auth F3]247Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TUB1 (Oryctolagus cuniculus)
Explore G1TUB1 
Go to UniProtKB:  G1TUB1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1TUB1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
eL8G [auth G3]319Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
uL6H [auth H3]192Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SWI6 (Oryctolagus cuniculus)
Explore G1SWI6 
Go to UniProtKB:  G1SWI6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SWI6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10I [auth I3]214Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for B7NZQ2 (Oryctolagus cuniculus)
Explore B7NZQ2 
Go to UniProtKB:  B7NZQ2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB7NZQ2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L11J [auth J3]178Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TUB8 (Oryctolagus cuniculus)
Explore G1TUB8 
Go to UniProtKB:  G1TUB8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1TUB8
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
eL13K [auth L3]211Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L14L [auth M3]218Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SZ12 (Oryctolagus cuniculus)
Explore G1SZ12 
Go to UniProtKB:  G1SZ12
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SZ12
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L15M [auth N3]204Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1T0C1 (Oryctolagus cuniculus)
Explore G1T0C1 
Go to UniProtKB:  G1T0C1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1T0C1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
uL13N [auth O3]203Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
uL22O [auth P3]184Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TVT6 (Oryctolagus cuniculus)
Explore G1TVT6 
Go to UniProtKB:  G1TVT6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1TVT6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
eL18P [auth Q3]188Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
eL19Q [auth R3]196Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
eL20R [auth S3]176Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
eL21S [auth T3]160Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SHQ2 (Oryctolagus cuniculus)
Explore G1SHQ2 
Go to UniProtKB:  G1SHQ2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SHQ2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
eL22T [auth U3]128Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L23U [auth V3]140Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1T6D1 (Oryctolagus cuniculus)
Explore G1T6D1 
Go to UniProtKB:  G1T6D1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1T6D1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
eL24V [auth W3]157Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SE28 (Oryctolagus cuniculus)
Explore G1SE28 
Go to UniProtKB:  G1SE28
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SE28
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
uL23W [auth X3]156Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SE76 (Oryctolagus cuniculus)
Explore G1SE76 
Go to UniProtKB:  G1SE76
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SE76
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L26X [auth Y3]145Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SQH0 (Oryctolagus cuniculus)
Explore G1SQH0 
Go to UniProtKB:  G1SQH0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SQH0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27Y [auth Z3]136Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TXF6 (Oryctolagus cuniculus)
Explore G1TXF6 
Go to UniProtKB:  G1TXF6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1TXF6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
uL15Z [auth a3]148Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SNY0 (Oryctolagus cuniculus)
Explore G1SNY0 
Go to UniProtKB:  G1SNY0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SNY0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
eL29AA [auth b3]226Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SGR6 (Oryctolagus cuniculus)
Explore G1SGR6 
Go to UniProtKB:  G1SGR6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SGR6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
eL30BA [auth c3]115Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TDL2 (Oryctolagus cuniculus)
Explore G1TDL2 
Go to UniProtKB:  G1TDL2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1TDL2
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
eL31CA [auth d3]125Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SHG0 (Oryctolagus cuniculus)
Explore G1SHG0 
Go to UniProtKB:  G1SHG0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SHG0
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
eL32DA [auth e3]135Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1U437 (Oryctolagus cuniculus)
Explore G1U437 
Go to UniProtKB:  G1U437
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1U437
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
eL33EA [auth f3]110Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SF08 (Oryctolagus cuniculus)
Explore G1SF08 
Go to UniProtKB:  G1SF08
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SF08
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
eL34FA [auth g3]116Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1U945 (Oryctolagus cuniculus)
Explore G1U945 
Go to UniProtKB:  G1U945
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1U945
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
uL29GA [auth h3]123Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SIT5 (Oryctolagus cuniculus)
Explore G1SIT5 
Go to UniProtKB:  G1SIT5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SIT5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36HA [auth i3]105Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TTQ5 (Oryctolagus cuniculus)
Explore G1TTQ5 
Go to UniProtKB:  G1TTQ5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1TTQ5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37IA [auth j3]97Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for U3KPD5 (Oryctolagus cuniculus)
Explore U3KPD5 
Go to UniProtKB:  U3KPD5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupU3KPD5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
eL38JA [auth k3]70Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1U001 (Oryctolagus cuniculus)
Explore G1U001 
Go to UniProtKB:  G1U001
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1U001
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
eL39KA [auth l3]51Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1TTN1 (Oryctolagus cuniculus)
Explore G1TTN1 
Go to UniProtKB:  G1TTN1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1TTN1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
eL40LA [auth m3]102Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60s ribosomal protein l41MA [auth n3]25Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for A0A087WNH4 (Oryctolagus cuniculus)
Explore A0A087WNH4 
Go to UniProtKB:  A0A087WNH4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A087WNH4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
eL42NA [auth o3]106Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1U344 (Oryctolagus cuniculus)
Explore G1U344 
Go to UniProtKB:  G1U344
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1U344
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
eL43OA [auth p3]92Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SY53 (Oryctolagus cuniculus)
Explore G1SY53 
Go to UniProtKB:  G1SY53
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SY53
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
eL28PA [auth r3]137Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1U7L1 (Oryctolagus cuniculus)
Explore G1U7L1 
Go to UniProtKB:  G1U7L1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1U7L1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
uL10QA [auth s3]318Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L12RA [auth t3]165Oryctolagus cuniculusMutation(s): 0 
UniProt
Find proteins for G1SMR7 (Oryctolagus cuniculus)
Explore G1SMR7 
Go to UniProtKB:  G1SMR7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG1SMR7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Nascent polypeptide-associated complex subunit alpha N-terminal regionWA [auth NI]29Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Nascent polypeptide-associated complex subunit alphaXA [auth NA]215Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription factor BTF3YA [auth NB]206Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Tetratricopeptide repeat protein 5ZA [auth TT]440Homo sapiensMutation(s): 0 
Gene Names: TTC5
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N0Z6 (Homo sapiens)
Explore Q8N0Z6 
Go to UniProtKB:  Q8N0Z6
PHAROS:  Q8N0Z6
GTEx:  ENSG00000136319 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N0Z6
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin BetaAB [auth 1]64Oryctolagus cuniculusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 45
MoleculeChains LengthOrganismImage
P-site tRNASA [auth 23]76Oryctolagus cuniculus
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 46
MoleculeChains LengthOrganismImage
28S ribosomal RNATA [auth 54]3,543Oryctolagus cuniculus
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 47
MoleculeChains LengthOrganismImage
5S ribosomal RNAUA [auth 74]120Oryctolagus cuniculus
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 48
MoleculeChains LengthOrganismImage
5.8S ribosomal RNAVA [auth 84]156Oryctolagus cuniculus
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download Ideal Coordinates CCD File 
FB [auth g3],
HB [auth j3],
JB [auth m3],
KB [auth o3],
LB [auth p3]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
AC [auth 54]
AD [auth 54]
AE [auth 54]
AF [auth 54]
AG [auth 54]
AC [auth 54],
AD [auth 54],
AE [auth 54],
AF [auth 54],
AG [auth 54],
AH [auth 54],
AI [auth 54],
AJ [auth 54],
BB [auth P3],
BC [auth 54],
BD [auth 54],
BE [auth 54],
BF [auth 54],
BG [auth 54],
BH [auth 54],
BI [auth 54],
BJ [auth 54],
CB [auth P3],
CC [auth 54],
CD [auth 54],
CE [auth 54],
CF [auth 54],
CG [auth 54],
CH [auth 54],
CI [auth 54],
CJ [auth 54],
DB [auth V3],
DC [auth 54],
DD [auth 54],
DE [auth 54],
DF [auth 54],
DG [auth 54],
DH [auth 54],
DI [auth 54],
DJ [auth 54],
EB [auth a3],
EC [auth 54],
ED [auth 54],
EE [auth 54],
EF [auth 54],
EG [auth 54],
EH [auth 54],
EI [auth 54],
EJ [auth 54],
FC [auth 54],
FD [auth 54],
FE [auth 54],
FF [auth 54],
FG [auth 54],
FH [auth 54],
FI [auth 54],
FJ [auth 74],
GB [auth g3],
GC [auth 54],
GD [auth 54],
GE [auth 54],
GF [auth 54],
GG [auth 54],
GH [auth 54],
GI [auth 54],
GJ [auth 74],
HC [auth 54],
HD [auth 54],
HE [auth 54],
HF [auth 54],
HG [auth 54],
HH [auth 54],
HI [auth 54],
HJ [auth 74],
IB [auth j3],
IC [auth 54],
ID [auth 54],
IE [auth 54],
IF [auth 54],
IG [auth 54],
IH [auth 54],
II [auth 54],
IJ [auth 74],
JC [auth 54],
JD [auth 54],
JE [auth 54],
JF [auth 54],
JG [auth 54],
JH [auth 54],
JI [auth 54],
JJ [auth 74],
KC [auth 54],
KD [auth 54],
KE [auth 54],
KF [auth 54],
KG [auth 54],
KH [auth 54],
KI [auth 54],
KJ [auth 74],
LC [auth 54],
LD [auth 54],
LE [auth 54],
LF [auth 54],
LG [auth 54],
LH [auth 54],
LI [auth 54],
LJ [auth 74],
MB [auth 54],
MC [auth 54],
MD [auth 54],
ME [auth 54],
MF [auth 54],
MG [auth 54],
MH [auth 54],
MI [auth 54],
MJ [auth 84],
NB [auth 54],
NC [auth 54],
ND [auth 54],
NE [auth 54],
NF [auth 54],
NG [auth 54],
NH [auth 54],
NI [auth 54],
NJ [auth 84],
OB [auth 54],
OC [auth 54],
OD [auth 54],
OE [auth 54],
OF [auth 54],
OG [auth 54],
OH [auth 54],
OI [auth 54],
OJ [auth 84],
PB [auth 54],
PC [auth 54],
PD [auth 54],
PE [auth 54],
PF [auth 54],
PG [auth 54],
PH [auth 54],
PI [auth 54],
PJ [auth 84],
QB [auth 54],
QC [auth 54],
QD [auth 54],
QE [auth 54],
QF [auth 54],
QG [auth 54],
QH [auth 54],
QI [auth 54],
QJ [auth 84],
RB [auth 54],
RC [auth 54],
RD [auth 54],
RE [auth 54],
RF [auth 54],
RG [auth 54],
RH [auth 54],
RI [auth 54],
RJ [auth 84],
SB [auth 54],
SC [auth 54],
SD [auth 54],
SE [auth 54],
SF [auth 54],
SG [auth 54],
SH [auth 54],
SI [auth 54],
TB [auth 54],
TC [auth 54],
TD [auth 54],
TE [auth 54],
TF [auth 54],
TG [auth 54],
TH [auth 54],
TI [auth 54],
UB [auth 54],
UC [auth 54],
UD [auth 54],
UE [auth 54],
UF [auth 54],
UG [auth 54],
UH [auth 54],
UI [auth 54],
VB [auth 54],
VC [auth 54],
VD [auth 54],
VE [auth 54],
VF [auth 54],
VG [auth 54],
VH [auth 54],
VI [auth 54],
WB [auth 54],
WC [auth 54],
WD [auth 54],
WE [auth 54],
WF [auth 54],
WG [auth 54],
WH [auth 54],
WI [auth 54],
XB [auth 54],
XC [auth 54],
XD [auth 54],
XE [auth 54],
XF [auth 54],
XG [auth 54],
XH [auth 54],
XI [auth 54],
YB [auth 54],
YC [auth 54],
YD [auth 54],
YE [auth 54],
YF [auth 54],
YG [auth 54],
YH [auth 54],
YI [auth 54],
ZB [auth 54],
ZC [auth 54],
ZD [auth 54],
ZE [auth 54],
ZF [auth 54],
ZG [auth 54],
ZH [auth 54],
ZI [auth 54]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.11 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMC_UP_A022_1007
Medical Research Council (United Kingdom)United KingdomMC_U105184332
Wellcome TrustUnited KingdomWT096570

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-27
    Type: Initial release
  • Version 1.1: 2020-01-15
    Changes: Database references