6Z3Q

Structure of EV71 in complex with a protective antibody 38-1-10A Fab


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural and functional analysis of protective antibodies targeting the threefold plateau of enterovirus 71.

Huang, K.A.Zhou, D.Fry, E.E.Kotecha, A.Huang, P.N.Yang, S.L.Tsao, K.C.Huang, Y.C.Lin, T.Y.Ren, J.Stuart, D.I.

(2020) Nat Commun 11: 5253-5253

  • DOI: https://doi.org/10.1038/s41467-020-19013-3
  • Primary Citation of Related Structures:  
    6Z3K, 6Z3P, 6Z3Q

  • PubMed Abstract: 

    Enterovirus 71 (EV71)-neutralizing antibodies correlate with protection and have potential as therapeutic agents. We isolate and characterize a panel of plasmablast-derived monoclonal antibodies from an infected child whose antibody response focuses on the plateau epitope near the icosahedral 3-fold axes. Eight of a total of 19 antibodies target this epitope and three of these potently neutralize the virus. Representative neutralizing antibodies 38-1-10A and 38-3-11A both confer effective protection against lethal EV71 challenge in hSCARB2-transgenic mice. The cryo-electron microscopy structures of the EV71 virion in complex with Fab fragments of these potent and protective antibodies reveal the details of a conserved epitope formed by residues in the BC and HI loops of VP2 and the BC and HI loops of VP3 spanning the region around the 3-fold axis. Remarkably, the two antibodies interact with the epitope in quite distinct ways. These plateau-binding antibodies provide templates for promising candidate therapeutics.


  • Organizational Affiliation

    Division of Pediatric Infectious Diseases, Department of Pediatrics, Chang Gung Memorial Hospital, Taoyuan, Taiwan. arthur1726@cgmh.org.tw.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
VP1297Enterovirus A71Mutation(s): 0 
EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data)
UniProt
Find proteins for A0A2L1GIK5 (Human enterovirus 71)
Explore A0A2L1GIK5 
Go to UniProtKB:  A0A2L1GIK5
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UniProt GroupA0A2L1GIK5
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
VP2254Enterovirus A71Mutation(s): 0 
UniProt
Find proteins for D4QGA2 (Human enterovirus 71)
Explore D4QGA2 
Go to UniProtKB:  D4QGA2
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UniProt GroupD4QGA2
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
VP3242Enterovirus A71Mutation(s): 0 
UniProt
Find proteins for D4QGA3 (Human enterovirus 71)
Explore D4QGA3 
Go to UniProtKB:  D4QGA3
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UniProt GroupD4QGA3
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
VP458Enterovirus A71Mutation(s): 0 
UniProt
Find proteins for Q6YLE3 (Human enterovirus 71)
Explore Q6YLE3 
Go to UniProtKB:  Q6YLE3
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UniProt GroupQ6YLE3
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Heavy chainE [auth H]236Homo sapiensMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Light chainF [auth L]219Homo sapiensMutation(s): 0 
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
SPH (Subject of Investigation/LOI)
Query on SPH

Download Ideal Coordinates CCD File 
G [auth A]SPHINGOSINE
C18 H37 N O2
WWUZIQQURGPMPG-MSOLQXFVSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/N00065X/1
Wellcome TrustUnited Kingdom101122/Z/13/Z

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-02
    Type: Initial release
  • Version 1.1: 2020-10-28
    Changes: Database references