X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 100 mM MES, pH 6.5, 12% PEG500 MME, 6% PEG20,000, 50 mM ammonium acetate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 54.17 α = 105.69
b = 54.19 β = 96.99
c = 104.04 γ = 96.06
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 270 -- 2015-06-05
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 1 PAL/PLS 7A (6B, 6C1)

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.99 50 95.2 -- -- -- 1.9 -- 71844 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.997 30.038 -- 1.97 -- 71844 3604 94.7 -- 0.1819 0.1795 0.228 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9975 2.0237 -- 114 2341 0.2163 0.2675 -- 84.0
X Ray Diffraction 2.0237 2.0515 -- 154 2595 0.2213 0.2693 -- 95.0
X Ray Diffraction 2.0515 2.0808 -- 125 2604 0.2245 0.2818 -- 91.0
X Ray Diffraction 2.0808 2.1118 -- 142 2594 0.2224 0.3009 -- 96.0
X Ray Diffraction 2.1118 2.1448 -- 161 2642 0.2091 0.2637 -- 96.0
X Ray Diffraction 2.1448 2.18 -- 143 2704 0.1994 0.2466 -- 96.0
X Ray Diffraction 2.18 2.2175 -- 125 2612 0.1959 0.2532 -- 96.0
X Ray Diffraction 2.2175 2.2578 -- 133 2587 0.2107 0.295 -- 91.0
X Ray Diffraction 2.2578 2.3013 -- 116 2609 0.2025 0.2846 -- 95.0
X Ray Diffraction 2.3013 2.3482 -- 143 2691 0.1888 0.2604 -- 96.0
X Ray Diffraction 2.3482 2.3992 -- 126 2655 0.1997 0.2691 -- 97.0
X Ray Diffraction 2.3992 2.455 -- 140 2697 0.2002 0.2583 -- 96.0
X Ray Diffraction 2.455 2.5164 -- 153 2666 0.1965 0.2805 -- 97.0
X Ray Diffraction 2.5164 2.5844 -- 139 2702 0.1951 0.2721 -- 96.0
X Ray Diffraction 2.5844 2.6604 -- 128 2644 0.1943 0.2701 -- 97.0
X Ray Diffraction 2.6604 2.7462 -- 142 2624 0.1889 0.2478 -- 95.0
X Ray Diffraction 2.7462 2.8443 -- 163 2667 0.1834 0.2529 -- 96.0
X Ray Diffraction 2.8443 2.9581 -- 141 2588 0.1831 0.2418 -- 95.0
X Ray Diffraction 2.9581 3.0926 -- 155 2659 0.1784 0.2533 -- 95.0
X Ray Diffraction 3.0926 3.2554 -- 138 2644 0.1726 0.2072 -- 96.0
X Ray Diffraction 3.2554 3.4591 -- 129 2617 0.1671 0.2219 -- 94.0
X Ray Diffraction 3.4591 3.7258 -- 150 2537 0.1547 0.1941 -- 92.0
X Ray Diffraction 3.7258 4.0999 -- 140 2567 0.1512 0.1806 -- 93.0
X Ray Diffraction 4.0999 4.6912 -- 107 2675 0.1381 0.166 -- 95.0
X Ray Diffraction 4.6912 5.903 -- 144 2688 0.1637 0.1787 -- 97.0
X Ray Diffraction 5.903 30.0415 -- 153 2631 0.2039 0.2198 -- 96.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.008
f_dihedral_angle_d 13.046
f_angle_d 1.165
f_chiral_restr 0.049
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8443
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 796

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
HKL-2000 data reduction
HKL-2000 data scaling
PHASER phasing