X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 50 mM Tris, pH 8.5, 30% PEG4,000, 0.2 M ammonium chloride, 10 mM CaCl2

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 98.69 α = 90
b = 103.21 β = 90
c = 184.75 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2015-10-04
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1 PAL/PLS 5C (4A)

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.29 50 99.8 -- -- -- 6.1 -- 42405 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.292 35.665 -- 1.35 -- 42405 2140 99.36 -- 0.1876 0.1845 0.2431 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2917 2.345 -- 117 2446 0.2489 0.3359 -- 92.0
X Ray Diffraction 2.345 2.4037 -- 146 2656 0.2386 0.2995 -- 100.0
X Ray Diffraction 2.4037 2.4687 -- 139 2704 0.2319 0.3155 -- 100.0
X Ray Diffraction 2.4687 2.5413 -- 135 2658 0.2318 0.3466 -- 100.0
X Ray Diffraction 2.5413 2.6233 -- 153 2660 0.2355 0.326 -- 100.0
X Ray Diffraction 2.6233 2.717 -- 144 2690 0.2255 0.3139 -- 100.0
X Ray Diffraction 2.717 2.8257 -- 122 2688 0.2241 0.2976 -- 100.0
X Ray Diffraction 2.8257 2.9543 -- 148 2688 0.2088 0.2767 -- 100.0
X Ray Diffraction 2.9543 3.11 -- 148 2688 0.2158 0.2726 -- 100.0
X Ray Diffraction 3.11 3.3047 -- 133 2670 0.1956 0.2595 -- 100.0
X Ray Diffraction 3.3047 3.5596 -- 141 2734 0.1713 0.2381 -- 100.0
X Ray Diffraction 3.5596 3.9174 -- 164 2677 0.1634 0.2142 -- 100.0
X Ray Diffraction 3.9174 4.4834 -- 155 2716 0.1407 0.1794 -- 100.0
X Ray Diffraction 4.4834 5.645 -- 140 2739 0.1348 0.178 -- 100.0
X Ray Diffraction 5.645 35.669 -- 155 2851 0.1763 0.2241 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 14.224
f_angle_d 1.222
f_chiral_restr 0.044
f_bond_d 0.009
f_plane_restr 0.006
Coordinate Error
Parameter Value
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6602
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 347

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
HKL-2000 data reduction
HKL-2000 data scaling
PHASER phasing