X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 290.0
Details 10% PEG 5000 ME, 5% Tascimate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.19 α = 90
b = 70.19 β = 90
c = 119.35 γ = 90
Symmetry
Space Group P 21 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 R CdTe 300K -- 2017-03-03
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRF BEAMLINE BL19U1 0.9778 SSRF BL19U1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.96 48.55 99.8 0.064 0.064 -- 10.6 -- 82216 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.96 -- 99.3 -- 0.705 2.9 10.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.96 48.536 -- 0.0 -- 78000 3799 99.85 -- 0.1944 0.1927 0.2272 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9615 1.9864 -- 151 2679 0.3624 0.3411 -- 98.0
X Ray Diffraction 1.9864 2.0125 -- 134 2754 0.3063 0.3439 -- 100.0
X Ray Diffraction 2.0125 2.0401 -- 125 2769 0.3024 0.2716 -- 100.0
X Ray Diffraction 2.0401 2.0692 -- 154 2764 0.3834 0.4036 -- 100.0
X Ray Diffraction 2.0692 2.1001 -- 137 2734 0.3755 0.4683 -- 100.0
X Ray Diffraction 2.1001 2.1329 -- 140 2776 0.2479 0.3157 -- 100.0
X Ray Diffraction 2.1329 2.1679 -- 142 2767 0.2415 0.2611 -- 100.0
X Ray Diffraction 2.1679 2.2053 -- 131 2715 0.2203 0.2356 -- 100.0
X Ray Diffraction 2.2053 2.2454 -- 170 2745 0.2868 0.3248 -- 100.0
X Ray Diffraction 2.2454 2.2886 -- 105 2724 0.3178 0.3691 -- 99.0
X Ray Diffraction 2.2886 2.3353 -- 177 2763 0.2216 0.2197 -- 100.0
X Ray Diffraction 2.3353 2.3861 -- 116 2751 0.198 0.2619 -- 100.0
X Ray Diffraction 2.3861 2.4416 -- 135 2765 0.1922 0.2708 -- 100.0
X Ray Diffraction 2.4416 2.5026 -- 148 2746 0.1948 0.1764 -- 100.0
X Ray Diffraction 2.5026 2.5703 -- 145 2749 0.1812 0.2259 -- 100.0
X Ray Diffraction 2.5703 2.6459 -- 140 2741 0.1962 0.2516 -- 100.0
X Ray Diffraction 2.6459 2.7313 -- 140 2749 0.202 0.2984 -- 100.0
X Ray Diffraction 2.7313 2.8289 -- 140 2753 0.2028 0.2245 -- 100.0
X Ray Diffraction 2.8289 2.9422 -- 146 2758 0.1886 0.2391 -- 100.0
X Ray Diffraction 2.9422 3.076 -- 140 2741 0.18 0.2249 -- 100.0
X Ray Diffraction 3.076 3.2382 -- 139 2738 0.1811 0.2716 -- 100.0
X Ray Diffraction 3.2382 3.441 -- 137 2772 0.1779 0.2667 -- 100.0
X Ray Diffraction 3.441 3.7066 -- 144 2752 0.1601 0.1523 -- 100.0
X Ray Diffraction 3.7066 4.0794 -- 151 2738 0.1513 0.1756 -- 100.0
X Ray Diffraction 4.0794 4.6693 -- 137 2745 0.1402 0.168 -- 100.0
X Ray Diffraction 4.6693 5.8813 -- 134 2750 0.1613 0.1834 -- 100.0
X Ray Diffraction 5.8813 48.5511 -- 141 2763 0.1913 0.2185 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.96
f_plane_restr 0.006
f_bond_d 0.01
f_chiral_restr 0.058
f_dihedral_angle_d 7.919
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3157
Nucleic Acid Atoms 0
Heterogen Atoms 79
Solvent Atoms 183

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
XDS data reduction
XSCALE data scaling
PHENIX phasing