X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details 0.8M SODIUM CITRATE, 100mM TRIS, pH 7.6

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 93.08 α = 90
b = 61.85 β = 102.73
c = 119.67 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2017-08-16
Diffraction Radiation
Monochromator Protocol
Double-crystal, Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.2 0.97741 ALS 5.0.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.88 51.12 97.3 0.056 -- -- 1.8 -- 53101 -- -- 34.28
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.88 1.95 95.1 0.456 -- 1.29 1.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.88 51.12 -- 1.33 -- 52704 1981 97.3 -- 0.222 0.22 0.255 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.88 1.927 -- 137 3522 0.4846 0.4905 0.0 95.0
X Ray Diffraction 1.927 1.9791 -- 139 3526 0.3621 0.3947 0.0 96.0
X Ray Diffraction 1.9791 2.0374 -- 139 3560 0.282 0.3117 0.0 97.0
X Ray Diffraction 2.0374 2.1031 -- 139 3582 0.2753 0.3183 0.0 97.0
X Ray Diffraction 2.1031 2.1783 -- 142 3592 0.2721 0.3082 0.0 97.0
X Ray Diffraction 2.1783 2.2655 -- 136 3566 0.3015 0.3589 0.0 96.0
X Ray Diffraction 2.2655 2.3686 -- 140 3571 0.2556 0.2834 0.0 97.0
X Ray Diffraction 2.3686 2.4935 -- 141 3633 0.2358 0.2892 0.0 98.0
X Ray Diffraction 2.4935 2.6497 -- 144 3670 0.2346 0.2617 0.0 98.0
X Ray Diffraction 2.6497 2.8543 -- 142 3651 0.2296 0.2955 0.0 99.0
X Ray Diffraction 2.8543 3.1415 -- 145 3700 0.2372 0.281 0.0 99.0
X Ray Diffraction 3.1415 3.596 -- 143 3654 0.2052 0.264 0.0 98.0
X Ray Diffraction 3.596 4.5301 -- 145 3700 0.1744 0.2067 0.0 99.0
X Ray Diffraction 4.5301 51.1352 -- 149 3796 0.1803 0.1876 0.0 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 46.25
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4145
Nucleic Acid Atoms 0
Heterogen Atoms 74
Solvent Atoms 244

Software

Software
Software Name Purpose
PHENIX refinement version: 1.11.1_2575
SCALA data scaling
PHASER phasing
PDB_EXTRACT data extraction version: 3.24
MOSFLM data reduction