X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 291.0
Details 2M NaCl 12% PEG 6K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 90.92 α = 90
b = 59.48 β = 102.67
c = 73.98 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2016-10-09
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.978570 SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.33 49.4 99.2 -- -- -- 4.74 -- 88372 -- -- 23.56
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.33 1.41 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.33 49.4 -- 0.0 -- 88135 4407 99.8 -- 0.201 0.2 0.226 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.33 1.36 -- 323 6150 0.3485 0.36 -- 99.71
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 29.94
Anisotropic B[1][1] 2.6206
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.2082
Anisotropic B[2][2] -2.9454
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.3247
RMS Deviations
Key Refinement Restraint Deviation
t_other_torsion 14.89
t_omega_torsion 3.77
t_angle_deg 1.04
t_bond_d 0.01
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.2
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2375
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 350

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.3
XDS data reduction
SCALA data scaling
PHASER phasing