X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 293.0
Details 20 % (v/v) glycerol ethoxylate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 61.18 α = 90
b = 61.18 β = 90
c = 167.38 γ = 120
Symmetry
Space Group P 31 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 2M-F -- 2017-11-03
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06DA 1.00767 SLS X06DA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 44.77 100.0 -- 0.119 -- 19.6 -- 29527 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.01 100.0 -- 1.55 1.4 19.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 44.768 -- 1.35 -- 29527 1487 100.0 -- 0.1897 0.1882 0.2188 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8998 1.9611 -- 132 2494 0.2797 0.2775 -- 100.0
X Ray Diffraction 1.9611 2.0312 -- 137 2504 0.243 0.2336 -- 100.0
X Ray Diffraction 2.0312 2.1125 -- 123 2518 0.2212 0.243 -- 100.0
X Ray Diffraction 2.1125 2.2086 -- 137 2507 0.2073 0.2276 -- 100.0
X Ray Diffraction 2.2086 2.3251 -- 141 2499 0.1982 0.2487 -- 100.0
X Ray Diffraction 2.3251 2.4707 -- 132 2523 0.1956 0.24 -- 100.0
X Ray Diffraction 2.4707 2.6615 -- 134 2556 0.193 0.2271 -- 100.0
X Ray Diffraction 2.6615 2.9293 -- 133 2530 0.186 0.2154 -- 100.0
X Ray Diffraction 2.9293 3.353 -- 134 2555 0.1854 0.232 -- 100.0
X Ray Diffraction 3.353 4.224 -- 138 2608 0.1625 0.2043 -- 100.0
X Ray Diffraction 4.224 44.7803 -- 146 2746 0.1819 0.1949 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.884
f_plane_restr 0.005
f_bond_d 0.011
f_chiral_restr 0.053
f_dihedral_angle_d 25.191
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2794
Nucleic Acid Atoms 0
Heterogen Atoms 30
Solvent Atoms 221

Software

Software
Software Name Purpose
PHENIX refinement version: (1.14_3260: ???)
XDS data reduction
PHASER phasing
Coot model building
XSCALE data scaling