X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details 0.1M acid carboxylique, 0.1M Tris/bicine pH8.5, 50%P500MME/P20k

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.86 α = 90
b = 73.83 β = 90.57
c = 128.52 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2018-02-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97857 SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.89 48.47 99.3 -- -- -- 3.4 -- 28415 -- -- 81.39
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.89 3.05 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.9 48.47 -- 0.0 -- 28397 1399 99.3 -- 0.191 0.187 0.263 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.9 2.92 -- 31 537 0.2443 0.3792 0.0 86.47
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 91.8
Anisotropic B[1][1] -9.6439
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -22.2483
Anisotropic B[2][2] 14.344
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -4.7001
RMS Deviations
Key Refinement Restraint Deviation
t_bond_d 0.01
t_angle_deg 1.24
t_other_torsion 21.07
t_omega_torsion 2.99
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.38
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7979
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 159

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.3
XDS data reduction
SCALA data scaling
MOLREP phasing
PDB_EXTRACT data extraction version: 3.24