X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details 0.1M MMT pH8.5-9.5, 20-30%(w/v) PEG 1500

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 48.66 α = 90
b = 61.1 β = 105.03
c = 84.14 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS EIGER X 9M -- 2017-03-30
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.9801 SOLEIL PROXIMA 2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.73 37.25 99.5 -- -- -- 6.9 -- 50086 -- -- 32.64
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.725 1.82 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.75 36.76 -- 0.0 -- 48206 2316 100.0 -- 0.197 0.195 0.228 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.75 1.79 -- 176 3369 0.257 0.268 0.0 99.97
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 41.55
Anisotropic B[1][1] 0.5558
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0836
Anisotropic B[2][2] 0.1786
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.7343
RMS Deviations
Key Refinement Restraint Deviation
t_angle_deg 1.05
t_other_torsion 15.1
t_bond_d 0.009
t_omega_torsion 3.75
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.24
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3243
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 399

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.3
XDS data reduction
SCALA data scaling
MOLREP phasing
PDB_EXTRACT data extraction version: 3.24