X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 277.0
Details 0.1M MES, pH 6.5, 8% dioxane, and 1.6M ammonium sulfate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 128.79 α = 90
b = 128.79 β = 90
c = 230.64 γ = 120
Symmetry
Space Group P 62 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2017-04-25
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRF BEAMLINE BL19U1 0.97776 SSRF BL19U1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.6 50 93.2 0.083 -- -- 5.7 -- 33189 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.6 2.69 95.1 0.868 0.868 1.97 6.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.6 49.367 -- 1.35 -- 33189 1681 93.25 -- 0.2146 0.2128 0.2465 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.5983 2.6748 -- 137 2614 0.2796 0.3015 -- 95.0
X Ray Diffraction 2.6748 2.7611 -- 136 2613 0.2834 0.2985 -- 95.0
X Ray Diffraction 2.7611 2.8598 -- 134 2636 0.2752 0.3203 -- 95.0
X Ray Diffraction 2.8598 2.9742 -- 140 2616 0.2527 0.2883 -- 95.0
X Ray Diffraction 2.9742 3.1096 -- 133 2613 0.2467 0.2691 -- 94.0
X Ray Diffraction 3.1096 3.2735 -- 125 2632 0.2388 0.2825 -- 94.0
X Ray Diffraction 3.2735 3.4785 -- 139 2617 0.2305 0.296 -- 94.0
X Ray Diffraction 3.4785 3.747 -- 141 2611 0.2114 0.3024 -- 94.0
X Ray Diffraction 3.747 4.1239 -- 160 2610 0.1887 0.2127 -- 93.0
X Ray Diffraction 4.1239 4.7203 -- 151 2610 0.1699 0.2136 -- 92.0
X Ray Diffraction 4.7203 5.9455 -- 140 2627 0.197 0.2197 -- 91.0
X Ray Diffraction 5.9455 49.3757 -- 145 2709 0.2228 0.2413 -- 88.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.083
f_plane_restr 0.009
f_dihedral_angle_d 25.571
f_bond_d 0.01
f_angle_d 1.302
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3787
Nucleic Acid Atoms 0
Heterogen Atoms 48
Solvent Atoms 57

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
HKL-3000 data reduction
HKL-3000 data scaling
PHENIX phasing