X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 277.12
Details 0.1 M phosphate-citrate, pH 4.2 40%(v/v) PEG300

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 100.47 α = 90
b = 109.78 β = 90
c = 146.39 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 78
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2016-10-16
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 23-ID-D 1.03315 APS 23-ID-D

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.85 50 95.7 -- 0.13 -- 6.8 -- 36821 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.85 2.9 74.6 -- 0.78 2.0 5.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.85 48.168 -- 1.37 -- 36821 1788 95.55 -- 0.2375 0.2366 0.2573 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.8497 2.9268 -- 94 2125 0.3541 0.3554 -- 76.0
X Ray Diffraction 2.9268 3.0129 -- 124 2255 0.3048 0.3394 -- 81.0
X Ray Diffraction 3.0129 3.1101 -- 121 2474 0.2862 0.3175 -- 89.0
X Ray Diffraction 3.1101 3.2212 -- 143 2691 0.2832 0.3191 -- 96.0
X Ray Diffraction 3.2212 3.3502 -- 142 2760 0.2696 0.2887 -- 100.0
X Ray Diffraction 3.3502 3.5026 -- 171 2744 0.2589 0.3117 -- 100.0
X Ray Diffraction 3.5026 3.6872 -- 143 2794 0.253 0.2411 -- 100.0
X Ray Diffraction 3.6872 3.9181 -- 139 2819 0.257 0.2654 -- 100.0
X Ray Diffraction 3.9181 4.2205 -- 131 2820 0.2462 0.2868 -- 100.0
X Ray Diffraction 4.2205 4.6449 -- 127 2840 0.1998 0.2059 -- 100.0
X Ray Diffraction 4.6449 5.3163 -- 143 2849 0.1987 0.199 -- 100.0
X Ray Diffraction 5.3163 6.6951 -- 145 2873 0.2216 0.2417 -- 100.0
X Ray Diffraction 6.6951 48.1749 -- 165 2989 0.2191 0.2473 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 18.079
f_angle_d 1.601
f_plane_restr 0.011
f_bond_d 0.011
f_chiral_restr 0.207
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 10024
Nucleic Acid Atoms 0
Heterogen Atoms 14
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (1.12_2829: ???)
HKL-2000 data reduction
SCALEPACK data scaling
PHASER phasing