1I6H

RNA POLYMERASE II ELONGATION COMPLEX


Sequence Similarity Clusters for the Entities in PDB 1I6H

Entity #1 | Chains: D
5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 186 189
95 % 64 186 250
90 % 64 186 260
70 % 65 222 240
50 % 65 222 265
40 % 65 222 280
30 % 65 222 302
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 134 295
95 % 60 134 390
90 % 60 134 407
70 % 60 134 441
50 % 61 153 428
40 % 61 155 442
30 % 61 155 460
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 182 200
95 % 62 182 258
90 % 62 182 266
70 % 62 182 302
50 % 63 201 321
40 % 63 201 334
30 % 63 201 355
Entity #2 | Chains: R
5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3' rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 132 306
95 % 60 132 399
90 % 60 132 415
70 % 61 151 364
50 % 61 153 423
40 % 61 153 447
30 % 61 153 465
Entity #4 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 59 133 300
95 % 60 134 392
90 % 60 134 409
70 % 61 155 353
50 % 61 170 380
40 % 62 178 372
30 % 62 194 367
Entity #5 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 129 315
95 % 58 129 416
90 % 58 129 436
70 % 58 129 462
50 % 58 129 505
40 % 58 131 522
30 % 58 131 554
Entity #6 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 65 187 188
95 % 65 187 248
90 % 65 187 258
70 % 66 206 274
50 % 66 208 306
40 % 66 223 275
30 % 66 223 296
Entity #7 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 62 181 201
95 % 62 181 260
90 % 62 181 269
70 % 62 181 304
50 % 63 202 317
40 % 63 202 330
30 % 63 202 350
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 63 186 191
95 % 64 187 249
90 % 64 187 259
70 % 64 187 298
50 % 65 206 310
40 % 65 206 325
30 % 65 222 307
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 133 302
95 % 60 133 398
90 % 60 133 414
70 % 61 152 358
50 % 61 154 419
40 % 61 169 406
30 % 61 185 388

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures