Sequence Similarity Clusters for the Entities in PDB 4KYI

Entity #1 | Chains: A,C,E,G
VipD protein, length: 551 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20386
95 % 2 2 18295 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.4
PDBFlex
90 % 2 2 18468
70 % 2 2 16692
50 % 2 2 15036
40 % 2 2 13964
30 % 2 2 12716
Entity #2 | Chains: B,D,F,H
Ras-related protein Rab-5C protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 17642
95 % 4 4 11755 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 17 18 2227
70 % 17 18 2288
50 % 22 24 1743
40 % 118 132 243
30 % 569 623 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures