Sequence Similarity Clusters for the Entities in PDB 4KYI

Entity #1 | Chains: A,C,E,G
VipD protein, length: 551 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19710
95 % 2 2 17954 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.4
PDBFlex
90 % 2 2 18146
70 % 2 2 16429
50 % 2 2 14788
40 % 2 2 13745
30 % 2 2 12520
Entity #2 | Chains: B,D,F,H
Ras-related protein Rab-5C protein, length: 170 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 15806
95 % 4 4 11524 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 17 18 2202
70 % 17 18 2264
50 % 22 24 1669
40 % 150 180 159
30 % 586 649 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures