Sequence Similarity Clusters for the Entities in PDB 5C8C

Entity #1 | Chains: A
VP1 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48212
95 % 1 7 12789 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.4
PDBFlex
90 % 1 7 12599
70 % 1 36 1216
50 % 1 51 941
40 % 1 168 237
30 % 1 170 243
Entity #2 | Chains: B
VP0 protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45475
95 % 1 2 41306 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 2 39371
70 % 1 14 2106
50 % 1 16 1983
40 % 1 16 2036
30 % 1 16 2063
Entity #3 | Chains: C
VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 12892
95 % 1 7 12651 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.6
PDBFlex
90 % 1 7 12106
70 % 1 55 860
50 % 4 225 179
40 % 4 227 192
30 % 7 268 129

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures