5C8C

Crystal structure of recombinant coxsackievirus A16 capsid


Sequence Similarity Clusters for the Entities in PDB 5C8C

Entity #1 | Chains: A
VP1 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 50254
95 % 1 16 4184
90 % 1 16 4181
70 % 1 50 921
50 % 1 68 759
40 % 6 172 252
30 % 6 232 207
Entity #2 | Chains: B
VP0 protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 51242
95 % 1 2 33475
90 % 1 2 36988
70 % 1 14 2229
50 % 1 16 2097
40 % 1 16 2143
30 % 1 16 2169
Entity #3 | Chains: C
VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 15 5014
95 % 1 15 5832
90 % 1 15 5862
70 % 1 71 721
50 % 6 243 173
40 % 6 247 181
30 % 9 289 127

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures