Sequence Similarity Clusters for the Entities in PDB 5DK3

Entity #1 | Chains: A,F
Light Chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17506
95 % 2 3 16392 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 74 238 78
70 % 800 2383 2
50 % 1017 3022 2
40 % 1017 3022 2
30 % 2080 6138 1
Entity #2 | Chains: B,G
Heavy Chain protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48455
95 % 1 1 40707 Flexibility: High
Max RMSD: 19.0, Avg RMSD: 19.0
PDBFlex
90 % 1 1 39684
70 % 3 8 6752
50 % 3 15 2936
40 % 3 21 1658
30 % 3 21 1678

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures