Sequence Similarity Clusters for the Entities in PDB 5DK3

Entity #1 | Chains: A,F
Light Chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17800
95 % 2 3 16669 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 266 798 2
70 % 822 2439 2
50 % 2127 6281 1
40 % 2127 6281 1
30 % 2142 6327 1
Entity #2 | Chains: B,G
Heavy Chain protein, length: 444 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49384
95 % 1 1 42350 Flexibility: High
Max RMSD: 19.0, Avg RMSD: 19.0
PDBFlex
90 % 1 1 40320
70 % 3 8 6782
50 % 4 17 2328
40 % 4 23 1484
30 % 4 23 1521

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures