Sequence Similarity Clusters for the Entities in PDB 5GGS

Entity #1 | Chains: A,C
heavy chain protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56270
95 % 1 2 21853 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 1 2 21307
70 % 534 2805 1
50 % 564 2949 1
40 % 564 2949 1
30 % 1115 5899 1
Entity #2 | Chains: B,D
light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16144
95 % 1 3 15540 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 43 250 75
70 % 435 2290 2
50 % 542 2908 2
40 % 542 2908 2
30 % 1116 5899 1
Entity #3 | Chains: Y,Z
Programmed cell death protein 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8355
95 % 1 7 8463 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 1 8 6990
70 % 1 8 5515
50 % 1 9 4607
40 % 1 9 4591
30 % 1 9 4451

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures