Sequence Similarity Clusters for the Entities in PDB 5GGS

Entity #1 | Chains: A,C
heavy chain protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53592
95 % 1 2 22484 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 1 2 21821
70 % 548 2902 1
50 % 577 3034 1
40 % 578 3047 1
30 % 1144 6093 1
Entity #2 | Chains: B,D
light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16824
95 % 1 3 15719 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 42 233 78
70 % 448 2367 2
50 % 556 3002 2
40 % 556 3002 2
30 % 1145 6093 1
Entity #3 | Chains: Y,Z
Programmed cell death protein 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8945
95 % 1 7 8412 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 1 8 6906
70 % 1 8 5694
50 % 1 9 4755
40 % 1 9 4764
30 % 1 9 4605

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures