5GGS

PD-1 in complex with pembrolizumab Fab


Sequence Similarity Clusters for the Entities in PDB 5GGS

Entity #1 | Chains: A,C
heavy chain protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62621
95 % 1 2 24594
90 % 1 2 23871
70 % 623 3313 1
50 % 1290 6927 1
40 % 1290 6928 1
30 % 1302 6975 1
Entity #2 | Chains: B,D
light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 16616
95 % 1 3 17554
90 % 58 296 66
70 % 506 2682 2
50 % 1291 6927 1
40 % 1291 6928 1
30 % 1303 6975 1
Entity #3 | Chains: Y,Z
Programmed cell death protein 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 7817
95 % 2 8 7560
90 % 2 8 7466
70 % 5 19 2843
50 % 9 26 2122
40 % 9 26 2148
30 % 9 26 2178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures