Sequence Similarity Clusters for the Entities in PDB 5GGS

Entity #1 | Chains: A,C
heavy chain protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58748
95 % 1 2 22834 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 1 2 21681
70 % 559 2969 1
50 % 592 3121 1
40 % 592 3121 1
30 % 1170 6236 1
Entity #2 | Chains: B,D
light chain protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 14747
95 % 1 3 15039 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.7
PDBFlex
90 % 159 797 2
70 % 459 2418 2
50 % 568 3071 2
40 % 568 3071 2
30 % 1171 6236 1
Entity #3 | Chains: Y,Z
Programmed cell death protein 1 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8891
95 % 2 8 6932 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.2
PDBFlex
90 % 2 8 6842
70 % 4 14 3705
50 % 4 15 3330
40 % 4 15 3319
30 % 4 15 3255

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures