Sequence Similarity Clusters for the Entities in PDB 5GGT

Entity #1 | Chains: A
Programmed cell death 1 ligand 1 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 7626
95 % 18 21 1540 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.2
PDBFlex
90 % 18 21 1568
70 % 18 21 1599
50 % 18 21 1619
40 % 18 21 1684
30 % 19 22 1685
Entity #2 | Chains: H
IgG H chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78658
95 % 1 1 55474
90 % 33 47 738
70 % 1882 2859 1
50 % 1979 3003 1
40 % 1979 3003 1
30 % 3951 6003 1
Entity #3 | Chains: L
IGK@ protein protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 78659
95 % 70 104 233 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 498 784 2
70 % 1559 2329 2
50 % 1949 2958 2
40 % 1949 2958 2
30 % 3952 6003 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures