Sequence Similarity Clusters for the Entities in PDB 5GGT

Entity #1 | Chains: A
Programmed cell death 1 ligand 1 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 7878
95 % 18 21 1564 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.2
PDBFlex
90 % 18 21 1600
70 % 18 21 1625
50 % 18 21 1655
40 % 18 21 1712
30 % 19 22 1717
Entity #2 | Chains: H
IgG H chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79636
95 % 1 1 56153
90 % 33 47 776
70 % 1899 2902 1
50 % 1986 3034 1
40 % 1996 3047 1
30 % 3987 6093 1
Entity #3 | Chains: L
IGK@ protein protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73105
95 % 72 109 230 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 149 233 78
70 % 1575 2367 2
50 % 1966 3002 2
40 % 1966 3002 2
30 % 3988 6093 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures