Sequence Similarity Clusters for the Entities in PDB 5LDR

Entity #1 | Chains: A
Beta-D-galactosidase protein, length: 732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26926
95 % 2 3 21000 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 2 3 20457
70 % 2 3 22082
50 % 2 3 16863
40 % 2 3 15554
30 % 2 3 16045
Entity #2 | Chains: B
Beta-D-galactosidase protein, length: 731 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26926
95 % 3 3 21000 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 3 3 20457
70 % 3 3 22082
50 % 3 3 16863
40 % 3 3 15554
30 % 3 3 16045

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures