Sequence Similarity Clusters for the Entities in PDB 5YNO

Entity #1 | Chains: A
nsp16 protein protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 6124
95 % 7 12 7225 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 7 12 7244
70 % 7 12 7083
50 % 7 15 5306
40 % 7 15 5158
30 % 7 15 4951
Entity #2 | Chains: B
nsp10 protein protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 6312
95 % 7 12 7545 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 7 12 7519
70 % 7 12 7362
50 % 7 12 6941
40 % 7 12 6710
30 % 7 12 6305

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5YNM 1 A nsp16 protein 1335626
2 5YNF 1 A nsp16 protein 1335626
3 5YNN 1 A nsp16 protein 1335626
4 5YN5 1 A nsp16 protein 1335626
5 5YNQ 1 A nsp16 protein 1335626
6 5YN6 1 A nsp16 protein 1335626
7 5YNO 1 A nsp16 protein 1335626
8 5YNB 1 A nsp16 protein 1335626
9 5YN8 1 A nsp16 protein 1335626
10 5YNJ 1 A nsp16 protein 1335626
11 5YNI 1 A nsp16 protein 1335626
12 2XYQ 1 A PUTATIVE 2'-O-METHYL TRANSFERASE RESIDUES 6776-7065 694009 2.1.1 | Details
13 2XYV 1 A PUTATIVE 2'-O-METHYL TRANSFERASE RESIDUES 6776-7065 694009 2.1.1 | Details
14 5YNP 1 A nsp16 protein 1335626
15 2XYR 1 A PUTATIVE 2'-O-METHYL TRANSFERASE RESIDUES 6776-7067 694009 2.1.1 | Details