Sequence Similarity Clusters for the Entities in PDB 5YNO

Entity #1 | Chains: A
nsp16 protein protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 6365
95 % 7 12 7595 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 7 12 7572
70 % 7 12 7350
50 % 7 15 5397
40 % 7 15 5259
30 % 7 15 5035
Entity #2 | Chains: B
nsp10 protein protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 12 6343
95 % 7 12 6986 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 7 12 7540
70 % 7 12 7382
50 % 7 12 6943
40 % 7 12 6723
30 % 7 12 6323

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5YNM 1 A nsp16 protein 1335626
2 5YNF 1 A nsp16 protein 1335626
3 5YNN 1 A nsp16 protein 1335626
4 5YN5 1 A nsp16 protein 1335626
5 5YNQ 1 A nsp16 protein 1335626
6 5YN6 1 A nsp16 protein 1335626
7 5YNO 1 A nsp16 protein 1335626
8 5YNB 1 A nsp16 protein 1335626
9 5YN8 1 A nsp16 protein 1335626
10 5YNJ 1 A nsp16 protein 1335626
11 5YNI 1 A nsp16 protein 1335626
12 5YNP 1 A nsp16 protein 1335626