Sequence Similarity Clusters for the Entities in PDB 6ABD

Entity #1 | Chains: A
Polymerase 3 protein, length: 710 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 10903
95 % 8 8 10911
90 % 8 8 10805
70 % 8 8 10386
50 % 11 11 4646
40 % 11 11 4533
30 % 11 11 4398
Entity #2 | Chains: B
RNA-directed RNA polymerase catalytic subunit protein, length: 753 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 10884
95 % 8 8 10993
90 % 8 8 10876
70 % 11 11 4775
50 % 11 11 4645
40 % 28 29 1690
30 % 28 29 1736
Entity #3 | Chains: C
Polymerase PB2 protein, length: 772 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 15375
95 % 6 6 14723
90 % 6 6 14519
70 % 6 6 13684
50 % 9 9 5463
40 % 9 9 5328
30 % 9 9 5077
Entity #4 | Chains: R
RNA (5'-R(P*CP*UP*CP*CP*UP*GP*CP*UP*UP*AP*UP*GP*CP*U)-3') rna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: V
RNA (5'-R(P*AP*GP*CP*AP*GP*UP*AP*GP*CP*AP*AP*GP*GP*AP*G)-3') rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures