6BSH

Structure of HIV-1 RT complexed with RNA/DNA hybrid in the RNA hydrolysis mode


Sequence Similarity Clusters for the Entities in PDB 6BSH

Entity #1 | Chains: A
REVERSE TRANSCRIPTASE P66 SUBUNIT protein, length: 558 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 19926
95 % 94 305 108 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.7
PDBFlex
90 % 94 305 113
70 % 94 305 125
50 % 95 306 141
40 % 95 307 160
30 % 95 307 165
Entity #2 | Chains: B
REVERSE TRANSCRIPTASE P51 SUBUNIT protein, length: 441 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 13474
95 % 92 299 114 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 92 299 121
70 % 92 299 132
50 % 93 300 150
40 % 93 301 166
30 % 93 301 171
Entity #3 | Chains: D
DNA (5'-D(*GP*TP*AP*TP*GP*CP*CP*AP*CP*TP*AP*GP*TP*TP*AP*TP*TP*GP*TP*GP*GP*CP*C)-3') dna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: R
RNA (25-MER) rna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

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