Sequence Similarity Clusters for the Entities in PDB 6DDE

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(i) subunit alpha-1 protein, length: 354 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 15 2078
95 % 51 55 768
90 % 59 63 616
70 % 70 75 508
50 % 91 96 434
40 % 113 119 396
30 % 113 119 405
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 56 649
95 % 56 64 752
90 % 56 64 798
70 % 56 64 833
50 % 58 66 819
40 % 58 68 827
30 % 58 68 863
Entity #3 | Chains: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 32 1567
95 % 42 50 1084
90 % 42 50 1115
70 % 42 50 1150
50 % 42 50 1177
40 % 42 50 1217
30 % 42 50 1260
Entity #4 | Chains: E
scFv16 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 29007
95 % 6 6 16141
90 % 6 6 13518
70 % 6 6 14869
50 % 2958 3048 1
40 % 2958 3048 1
30 % 5902 6095 1
Entity #5 | Chains: R
Mu-type opioid receptor protein, length: 356 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 52960
95 % 1 2 40132
90 % 1 2 38203
70 % 1 2 33907
50 % 1 2 29487
40 % 1 2 26758
30 % 1 2 23734
Entity #6 | Chains: D
DAMGO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures