Sequence Similarity Clusters for the Entities in PDB 6DDE

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(i) subunit alpha-1 protein, length: 354 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 17 1977
95 % 59 63 704
90 % 67 71 580
70 % 74 77 532
50 % 112 117 398
40 % 134 140 366
30 % 134 140 384
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 56 760
95 % 76 84 608
90 % 76 84 634
70 % 76 84 668
50 % 78 86 668
40 % 78 86 700
30 % 78 88 717
Entity #3 | Chains: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 42 1239
95 % 62 70 780
90 % 62 70 810
70 % 49 57 1068
50 % 49 57 1112
40 % 49 57 1137
30 % 49 57 1182
Entity #4 | Chains: E
scFv16 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 13402
95 % 11 11 8303
90 % 11 11 7883
70 % 11 11 7863
50 % 6235 6427 1
40 % 6236 6428 1
30 % 6277 6475 1
Entity #5 | Chains: R
Mu-type opioid receptor protein, length: 356 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55862
95 % 1 2 39382
90 % 1 2 37567
70 % 1 2 33347
50 % 1 2 28999
40 % 1 2 26328
30 % 1 2 23390
Entity #6 | Chains: D
DAMGO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures