6DDE

Mu Opioid Receptor-Gi Protein Complex


Sequence Similarity Clusters for the Entities in PDB 6DDE

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(i) subunit alpha-1 protein, length: 354 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 18 1995
95 % 61 65 740
90 % 69 73 605
70 % 76 79 543
50 % 116 121 400
40 % 138 144 372
30 % 138 144 386
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 59 757
95 % 83 91 592
90 % 83 91 622
70 % 83 91 648
50 % 85 93 652
40 % 85 93 691
30 % 85 95 687
Entity #3 | Chains: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 75 577
95 % 69 77 742
90 % 69 77 781
70 % 55 63 994
50 % 55 63 1025
40 % 55 63 1057
30 % 55 63 1106
Entity #4 | Chains: E
scFv16 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 8391
95 % 9 9 10021
90 % 11 11 8256
70 % 15 15 5840
50 % 6494 6686 1
40 % 6495 6687 1
30 % 6536 6734 1
Entity #5 | Chains: R
Mu-type opioid receptor protein, length: 356 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 60419
95 % 1 2 40355
90 % 1 2 38429
70 % 1 2 34067
50 % 1 2 29438
40 % 1 2 26891
30 % 1 2 23780
Entity #6 | Chains: D
DAMGO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures