Sequence Similarity Clusters for the Entities in PDB 6DDE

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(i) subunit alpha-1 protein, length: 354 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 15 2119
95 % 51 55 784
90 % 59 63 632
70 % 70 75 513
50 % 92 97 441
40 % 114 120 398
30 % 114 120 410
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 58 640
95 % 58 66 745
90 % 58 66 780
70 % 58 66 822
50 % 60 68 805
40 % 60 70 811
30 % 60 70 850
Entity #3 | Chains: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 33 1562
95 % 44 52 1048
90 % 44 52 1093
70 % 31 39 1474
50 % 31 39 1494
40 % 31 39 1529
30 % 31 39 1560
Entity #4 | Chains: E
scFv16 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 24699
95 % 6 6 13833
90 % 6 6 13607
70 % 6 6 15073
50 % 3027 3117 1
40 % 3027 3117 1
30 % 6035 6228 1
Entity #5 | Chains: R
Mu-type opioid receptor protein, length: 356 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56177
95 % 1 2 40545
90 % 1 2 38731
70 % 1 2 34332
50 % 1 2 29818
40 % 1 2 27042
30 % 1 2 23982
Entity #6 | Chains: D
DAMGO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures