Sequence Similarity Clusters for the Entities in PDB 6DDE

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(i) subunit alpha-1 protein, length: 354 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 15 2134
95 % 51 55 798
90 % 59 63 641
70 % 70 75 524
50 % 93 98 438
40 % 115 121 400
30 % 115 121 412
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 59 627
95 % 59 67 748
90 % 59 67 778
70 % 59 67 821
50 % 61 69 801
40 % 61 71 812
30 % 61 71 849
Entity #3 | Chains: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 34 1526
95 % 45 53 1043
90 % 45 53 1080
70 % 32 40 1478
50 % 32 40 1496
40 % 32 40 1544
30 % 32 40 1570
Entity #4 | Chains: E
scFv16 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 26422
95 % 6 6 15205
90 % 6 6 15694
70 % 6 6 14053
50 % 6082 6273 1
40 % 6082 6273 1
30 % 6122 6319 1
Entity #5 | Chains: R
Mu-type opioid receptor protein, length: 356 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 56689
95 % 1 2 40973
90 % 1 2 39007
70 % 1 2 34631
50 % 1 2 30044
40 % 1 2 27281
30 % 1 2 24194
Entity #6 | Chains: D
DAMGO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures