Sequence Similarity Clusters for the Entities in PDB 6DDE

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(i) subunit alpha-1 protein, length: 354 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 15 2028
95 % 50 54 764
90 % 56 60 605
70 % 65 70 511
50 % 86 91 439
40 % 108 114 400
30 % 108 114 409
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 56 629
95 % 54 62 762
90 % 54 62 796
70 % 54 62 835
50 % 56 64 813
40 % 56 66 830
30 % 56 66 862
Entity #3 | Chains: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 32 1521
95 % 42 50 1054
90 % 42 50 1085
70 % 42 50 1119
50 % 42 50 1151
40 % 42 50 1183
30 % 42 50 1227
Entity #4 | Chains: E
scFv16 protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 26644
95 % 6 6 14219
90 % 6 6 15042
70 % 6 6 14172
50 % 2858 2948 1
40 % 2858 2948 1
30 % 5704 5897 1
Entity #5 | Chains: R
Mu-type opioid receptor protein, length: 356 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 51600
95 % 1 2 39201
90 % 1 2 37387
70 % 1 2 33341
50 % 1 2 28940
40 % 1 2 26257
30 % 1 2 23281
Entity #6 | Chains: D
DAMGO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures