Sequence Similarity Clusters for the Entities in PDB 6DDF

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(i) subunit alpha-1 protein, length: 354 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 15 2130
95 % 52 55 791
90 % 60 63 629
70 % 71 75 516
50 % 93 97 440
40 % 115 120 402
30 % 115 120 414
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 58 650
95 % 59 66 761
90 % 59 66 797
70 % 59 66 829
50 % 61 68 818
40 % 61 70 825
30 % 61 70 862
Entity #3 | Chains: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 28 2053
95 % 45 52 1075
90 % 45 52 1099
70 % 32 39 1484
50 % 32 39 1509
40 % 32 39 1553
30 % 32 39 1573
Entity #4 | Chains: R
Mu-type opioid receptor protein, length: 356 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 56328
95 % 2 2 40761
90 % 2 2 38835
70 % 2 2 34433
50 % 2 2 29912
40 % 2 2 27174
30 % 2 2 24070
Entity #5 | Chains: D
DAMGO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures