6DDF

Mu Opioid Receptor-Gi Protein Complex


Sequence Similarity Clusters for the Entities in PDB 6DDF

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(i) subunit alpha-1 protein, length: 354 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 1946
95 % 64 67 751
90 % 72 75 631
70 % 82 84 536
50 % 135 141 376
40 % 157 162 352
30 % 157 162 369
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 96 464
95 % 100 107 508
90 % 100 107 530
70 % 100 107 557
50 % 102 109 566
40 % 102 111 595
30 % 102 111 620
Entity #3 | Chains: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 86 528
95 % 81 88 675
90 % 81 88 703
70 % 66 73 905
50 % 66 73 932
40 % 66 73 966
30 % 66 73 1008
Entity #4 | Chains: R
Mu-type opioid receptor protein, length: 356 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 60076
95 % 2 2 43383
90 % 2 2 41271
70 % 2 2 36441
50 % 2 2 31542
40 % 2 2 28604
30 % 2 2 25354
Entity #5 | Chains: D
DAMGO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures