Sequence Similarity Clusters for the Entities in PDB 6DDF

Entity #1 | Chains: A
Guanine nucleotide-binding protein G(i) subunit alpha-1 protein, length: 354 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 15 2136
95 % 52 55 799
90 % 60 63 639
70 % 71 75 527
50 % 94 98 440
40 % 116 121 398
30 % 116 121 412
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 protein, length: 344 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 59 639
95 % 60 67 746
90 % 60 67 777
70 % 60 67 817
50 % 62 69 794
40 % 62 71 809
30 % 62 71 856
Entity #3 | Chains: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 34 1531
95 % 46 53 1041
90 % 46 53 1085
70 % 33 40 1480
50 % 33 40 1498
40 % 33 40 1534
30 % 33 40 1569
Entity #4 | Chains: R
Mu-type opioid receptor protein, length: 356 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 56765
95 % 2 2 41007
90 % 2 2 39104
70 % 2 2 34670
50 % 2 2 30095
40 % 2 2 27338
30 % 2 2 24187
Entity #5 | Chains: D
DAMGO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures