Sequence Similarity Clusters for the Entities in PDB 6DQD

Entity #1 | Chains: A
Linked KDM5A Jmj Domain protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 35 1495
95 % 31 35 1973 Flexibility: No
Max RMSD: 1.7, Avg RMSD: 0.4
PDBFlex
90 % 31 35 1977
70 % 31 35 2020
50 % 31 35 2062
40 % 31 38 1946
30 % 31 38 1932

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures