Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27465
95 % 2 15 5346
90 % 2 15 5392
70 % 2 15 5330
50 % 2 15 5401
40 % 2 15 5265
30 % 2 15 5041
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4649
95 % 2 15 5328
90 % 2 15 5407
70 % 151 213 239
50 % 151 213 253
40 % 151 213 267
30 % 151 213 285
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4666
95 % 2 15 5329
90 % 2 15 5380
70 % 2 15 5317
50 % 2 15 5125
40 % 2 15 4993
30 % 2 15 4808
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4646
95 % 2 15 5593
90 % 2 15 5641
70 % 2 15 5596
50 % 2 15 5376
40 % 2 15 5147
30 % 2 15 5020
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8093
95 % 2 15 5526
90 % 2 15 5576
70 % 2 15 5505
50 % 140 170 368
40 % 148 178 354
30 % 148 193 342
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8447
95 % 2 15 5517
90 % 2 15 5603
70 % 2 15 5494
50 % 2 15 5339
40 % 4 20 3739
30 % 4 20 3660
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 3804
95 % 3 16 4102
90 % 3 16 4125
70 % 3 16 4113
50 % 3 16 4005
40 % 4 18 3435
30 % 4 18 3362
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75221
95 % 2 15 5516
90 % 2 15 5570
70 % 2 15 5493
50 % 2 15 5304
40 % 152 214 261
30 % 152 214 280
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5608
95 % 2 16 5088
90 % 2 16 5136
70 % 2 16 5082
50 % 2 16 4925
40 % 2 16 4803
30 % 2 16 4662
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3410
95 % 3 16 4182
90 % 3 16 4249
70 % 3 16 4245
50 % 81 110 524
40 % 81 110 554
30 % 81 110 580
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4034
95 % 2 16 4957
90 % 2 16 5088
70 % 2 16 4959
50 % 2 16 4824
40 % 2 16 4703
30 % 150 213 287
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5441
95 % 2 15 5486
90 % 2 15 5535
70 % 2 15 5464
50 % 2 15 5273
40 % 2 15 5152
30 % 2 15 4941

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures