6DRD

RNA Pol II(G)


Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 24808
95 % 3 16 5461
90 % 3 16 5203
70 % 3 16 5133
50 % 3 16 4997
40 % 3 16 4876
30 % 3 16 4740
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4529
95 % 3 16 5593
90 % 3 16 5648
70 % 168 230 245
50 % 168 230 258
40 % 168 230 271
30 % 168 230 286
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4635
95 % 3 16 5697
90 % 3 16 5743
70 % 3 16 5375
50 % 3 16 5203
40 % 3 16 5072
30 % 3 16 4905
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4579
95 % 3 16 5128
90 % 3 16 5191
70 % 3 16 5112
50 % 3 16 4973
40 % 3 16 4859
30 % 3 16 4723
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8625
95 % 3 16 5485
90 % 3 16 5346
70 % 3 16 5455
50 % 148 178 371
40 % 148 178 391
30 % 160 205 351
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8885
95 % 3 16 5641
90 % 3 16 5489
70 % 3 16 5613
50 % 3 16 5397
40 % 5 21 3795
30 % 5 21 3730
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 15 3990
95 % 4 17 4156
90 % 4 17 4058
70 % 4 17 4197
50 % 4 17 4117
40 % 5 19 3502
30 % 5 19 3445
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78984
95 % 3 16 5405
90 % 3 16 5474
70 % 3 16 5384
50 % 3 16 5214
40 % 169 231 264
30 % 169 231 280
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5796
95 % 3 17 4989
90 % 3 17 5053
70 % 3 17 4985
50 % 3 17 4848
40 % 3 17 4745
30 % 3 17 4608
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 17 3400
95 % 4 17 4009
90 % 4 17 4075
70 % 4 17 4046
50 % 82 111 558
40 % 82 111 595
30 % 82 111 616
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 17 4215
95 % 3 17 4966
90 % 3 17 5024
70 % 3 17 4959
50 % 3 17 4825
40 % 3 17 4724
30 % 167 230 287
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 5202
95 % 3 16 5640
90 % 3 16 5691
70 % 3 16 5612
50 % 3 16 5396
40 % 147 177 392
30 % 148 193 379

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures