Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 20246
95 % 2 15 5281
90 % 2 15 5324
70 % 2 15 5270
50 % 2 15 4899
40 % 2 15 4767
30 % 2 15 4587
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4419
95 % 2 15 5231
90 % 2 15 5274
70 % 151 213 216
50 % 151 213 233
40 % 151 213 248
30 % 151 213 266
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4418
95 % 2 15 5230
90 % 2 15 5273
70 % 2 15 5216
50 % 2 15 5022
40 % 2 15 4893
30 % 2 15 4692
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4553
95 % 2 15 5348
90 % 2 15 5393
70 % 2 15 5104
50 % 2 15 4914
40 % 2 15 4785
30 % 2 15 4604
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7842
95 % 2 15 5137
90 % 2 15 5331
70 % 2 15 5279
50 % 140 170 352
40 % 148 178 345
30 % 148 193 324
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7219
95 % 2 15 5208
90 % 2 15 5245
70 % 2 15 5192
50 % 2 15 5000
40 % 4 20 3562
30 % 4 20 3488
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 3779
95 % 3 16 3989
90 % 3 16 4004
70 % 3 16 3987
50 % 3 16 3891
40 % 4 18 3273
30 % 4 18 3207
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60086
95 % 2 15 5140
90 % 2 15 5178
70 % 2 15 5115
50 % 2 15 4922
40 % 152 214 242
30 % 152 214 260
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5302
95 % 2 16 4939
90 % 2 16 4992
70 % 2 16 4928
50 % 2 16 4760
40 % 2 16 4635
30 % 2 16 4484
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3210
95 % 3 16 3878
90 % 3 16 3942
70 % 3 16 3923
50 % 81 110 498
40 % 81 110 526
30 % 81 110 551
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 3844
95 % 2 16 4655
90 % 2 16 4712
70 % 2 16 4662
50 % 2 16 4537
40 % 2 16 4431
30 % 150 213 267
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5245
95 % 2 15 5236
90 % 2 15 5279
70 % 2 15 5221
50 % 2 15 5031
40 % 2 15 4900
30 % 2 15 4699

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures