Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 23714
95 % 2 15 5462
90 % 2 15 5511
70 % 2 15 5461
50 % 2 15 5205
40 % 2 15 5070
30 % 2 15 4863
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4604
95 % 2 15 5439
90 % 2 15 5482
70 % 151 213 237
50 % 151 213 248
40 % 151 213 264
30 % 151 213 281
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4721
95 % 2 15 5542
90 % 2 15 5595
70 % 2 15 5543
50 % 2 15 5348
40 % 2 15 5204
30 % 2 15 4986
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4450
95 % 2 15 5285
90 % 2 15 5564
70 % 2 15 5511
50 % 2 15 5074
40 % 2 15 5179
30 % 2 15 4756
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7940
95 % 2 15 5354
90 % 2 15 5397
70 % 2 15 5260
50 % 140 170 362
40 % 148 178 355
30 % 148 193 337
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7447
95 % 2 15 5280
90 % 2 15 5332
70 % 2 15 5270
50 % 2 15 5076
40 % 4 20 3695
30 % 4 20 3606
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 3828
95 % 3 16 4051
90 % 3 16 4077
70 % 3 16 4054
50 % 3 16 3951
40 % 4 18 3391
30 % 4 18 3318
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61316
95 % 2 15 5536
90 % 2 15 5589
70 % 2 15 5537
50 % 2 15 5345
40 % 152 214 256
30 % 152 214 272
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5301
95 % 2 16 4794
90 % 2 16 4940
70 % 2 16 4811
50 % 2 16 4935
40 % 2 16 4808
30 % 2 16 4638
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3308
95 % 3 16 4059
90 % 3 16 4076
70 % 3 16 4120
50 % 81 110 507
40 % 81 110 542
30 % 81 110 565
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4363
95 % 2 16 4985
90 % 2 16 5210
70 % 2 16 5148
50 % 2 16 4984
40 % 2 16 4857
30 % 150 213 287
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5407
95 % 2 15 5405
90 % 2 15 5446
70 % 2 15 5387
50 % 2 15 5204
40 % 2 15 5069
30 % 2 15 4862

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6O9L 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
2 6DRD 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
3 6GML 1 A DNA-directed RNA polymerase subunit 9823 2.7.7.6 | Details
4 6GMH 1 A RPB1 9823 2.7.7.6 | Details
5 6EXV 1 A DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 9823 2.7.7.6 | Details
6 5OIK 1 A DNA-directed RNA polymerase II subunit RPB1 9913 2.7.7.6 | Details
7 5IY6 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
8 5IY7 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
9 5IY8 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
10 5IY9 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
11 5IYA 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
12 5IYB 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
13 5IYC 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
14 5IYD 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
15 5FLM 1 A DNA-DIRECTED RNA POLYMERASE 9913 2.7.7.6 | Details