Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 24741
95 % 2 15 5248
90 % 2 15 5293
70 % 2 15 5231
50 % 2 15 5318
40 % 2 15 5182
30 % 2 15 4959
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4581
95 % 2 15 5260
90 % 2 15 5310
70 % 151 213 222
50 % 151 213 238
40 % 151 213 255
30 % 151 213 272
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4648
95 % 2 15 5505
90 % 2 15 5541
70 % 2 15 5463
50 % 2 15 5286
40 % 2 15 5154
30 % 2 15 4935
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4486
95 % 2 15 5314
90 % 2 15 5350
70 % 2 15 5289
50 % 2 15 5098
40 % 2 15 4967
30 % 2 15 4779
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7437
95 % 2 15 5264
90 % 2 15 5298
70 % 2 15 5411
50 % 140 170 358
40 % 148 178 353
30 % 148 193 332
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7399
95 % 2 15 5255
90 % 2 15 5304
70 % 2 15 5245
50 % 2 15 5056
40 % 4 20 3681
30 % 4 20 3595
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 3856
95 % 3 16 4039
90 % 3 16 4115
70 % 3 16 4161
50 % 3 16 4054
40 % 4 18 3385
30 % 4 18 3313
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61021
95 % 2 15 5249
90 % 2 15 5294
70 % 2 15 5232
50 % 2 15 5044
40 % 152 214 249
30 % 152 214 269
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5276
95 % 2 16 5028
90 % 2 16 4785
70 % 2 16 5034
50 % 2 16 4873
40 % 2 16 4750
30 % 2 16 4605
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3362
95 % 3 16 3984
90 % 3 16 4141
70 % 3 16 4141
50 % 81 110 504
40 % 81 110 536
30 % 81 110 561
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4130
95 % 2 16 4939
90 % 2 16 4877
70 % 2 16 4779
50 % 2 16 4643
40 % 2 16 4683
30 % 150 213 279
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5391
95 % 2 15 5384
90 % 2 15 5432
70 % 2 15 5373
50 % 2 15 5183
40 % 2 15 5053
30 % 2 15 4849

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6O9L 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
2 6DRD 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
3 6GML 1 A DNA-directed RNA polymerase subunit 9823 2.7.7.6 | Details
4 6GMH 1 A RPB1 9823 2.7.7.6 | Details
5 6EXV 1 A DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 9823 2.7.7.6 | Details
6 5OIK 1 A DNA-directed RNA polymerase II subunit RPB1 9913 2.7.7.6 | Details
7 5IY6 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
8 5IY7 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
9 5IY8 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
10 5IY9 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
11 5IYA 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
12 5IYB 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
13 5IYC 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
14 5IYD 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
15 5FLM 1 A DNA-DIRECTED RNA POLYMERASE 9913 2.7.7.6 | Details