Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27986
95 % 2 15 5469
90 % 2 15 5505
70 % 2 15 5449
50 % 2 15 5475
40 % 2 15 5343
30 % 2 15 5022
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4831
95 % 2 15 5658
90 % 2 15 5613
70 % 159 221 230
50 % 159 221 249
40 % 159 221 262
30 % 159 221 279
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4750
95 % 2 15 5758
90 % 2 15 5534
70 % 2 15 5477
50 % 2 15 5460
40 % 2 15 5326
30 % 2 15 4937
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4729
95 % 2 15 5707
90 % 2 15 5739
70 % 2 15 5666
50 % 2 15 5473
40 % 2 15 5336
30 % 2 15 5109
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8266
95 % 2 15 5738
90 % 2 15 5772
70 % 2 15 5701
50 % 140 170 372
40 % 148 178 363
30 % 149 194 352
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7757
95 % 2 15 5535
90 % 2 15 5567
70 % 2 15 5509
50 % 2 15 5342
40 % 4 20 3863
30 % 4 20 3770
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 4029
95 % 3 16 4138
90 % 3 16 4239
70 % 3 16 4206
50 % 3 16 4124
40 % 4 18 3478
30 % 4 18 3406
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76493
95 % 2 15 5593
90 % 2 15 5617
70 % 2 15 5564
50 % 2 15 5357
40 % 160 222 258
30 % 160 222 273
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5721
95 % 2 16 5192
90 % 2 16 5244
70 % 2 16 5183
50 % 2 16 5017
40 % 2 16 4909
30 % 2 16 4742
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3508
95 % 3 16 4132
90 % 3 16 4186
70 % 3 16 4159
50 % 81 110 531
40 % 81 110 570
30 % 81 110 591
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4314
95 % 2 16 5205
90 % 2 16 5433
70 % 2 16 5372
50 % 2 16 4828
40 % 2 16 4920
30 % 158 221 286
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5633
95 % 2 15 5447
90 % 2 15 5608
70 % 2 15 5425
50 % 2 15 5229
40 % 2 15 5099
30 % 2 15 4895

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6O9L 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
2 6DRD 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
3 6GML 1 A DNA-directed RNA polymerase subunit 9823 2.7.7.6 | Details
4 6GMH 1 A RPB1 9823 2.7.7.6 | Details
5 6EXV 1 A DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 9823 2.7.7.6 | Details
6 5OIK 1 A DNA-directed RNA polymerase II subunit RPB1 9913 2.7.7.6 | Details
7 5IY6 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
8 5IY7 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
9 5IY8 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
10 5IY9 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
11 5IYA 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
12 5IYB 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
13 5IYC 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
14 5IYD 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
15 5FLM 1 A DNA-DIRECTED RNA POLYMERASE 9913 2.7.7.6 | Details