6DRD

RNA Pol II(G)


Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 25467
95 % 2 15 5929
90 % 2 15 5972
70 % 2 15 5880
50 % 2 15 5413
40 % 2 15 5251
30 % 2 15 5044
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 5031
95 % 2 15 5908
90 % 2 15 5940
70 % 167 229 244
50 % 167 229 257
40 % 167 229 269
30 % 167 229 286
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4804
95 % 2 15 5653
90 % 2 15 5698
70 % 2 15 5615
50 % 2 15 5401
40 % 2 15 5241
30 % 2 15 5032
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4993
95 % 2 15 5954
90 % 2 15 5991
70 % 2 15 5661
50 % 2 15 5691
40 % 2 15 5287
30 % 2 15 5285
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7949
95 % 2 15 5928
90 % 2 15 5971
70 % 2 15 5879
50 % 147 177 373
40 % 158 188 367
30 % 159 204 351
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8376
95 % 2 15 5672
90 % 2 15 5715
70 % 2 15 5631
50 % 2 15 5412
40 % 4 20 3922
30 % 4 20 3825
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 4173
95 % 3 16 4387
90 % 3 16 4325
70 % 3 16 4302
50 % 3 16 4208
40 % 4 18 3585
30 % 4 18 3504
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78546
95 % 2 15 5834
90 % 2 15 5882
70 % 2 15 5794
50 % 2 15 5585
40 % 168 230 264
30 % 168 230 281
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5972
95 % 2 16 5591
90 % 2 16 5641
70 % 2 16 5565
50 % 2 16 5194
40 % 2 16 5200
30 % 2 16 4868
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3630
95 % 3 16 4319
90 % 3 16 4378
70 % 3 16 4359
50 % 81 110 560
40 % 81 110 598
30 % 81 110 617
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4421
95 % 2 16 5123
90 % 2 16 5183
70 % 2 16 5114
50 % 2 16 4979
40 % 2 16 5081
30 % 166 229 288
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5781
95 % 2 15 5803
90 % 2 15 5842
70 % 2 15 5759
50 % 2 15 5551
40 % 2 15 5386
30 % 2 15 5162

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6O9L 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
2 6DRD 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
3 6GML 1 A DNA-directed RNA polymerase subunit 9823 2.7.7.6 | Details
4 6GMH 1 A RPB1 9823 2.7.7.6 | Details
5 6EXV 1 A DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 9823 2.7.7.6 | Details
6 5OIK 1 A DNA-directed RNA polymerase II subunit RPB1 9913 2.7.7.6 | Details
7 5IY6 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
8 5IY7 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
9 5IY8 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
10 5IY9 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
11 5IYA 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
12 5IYB 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
13 5IYC 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
14 5IYD 1 A DNA-directed RNA polymerase II subunit RPB1 9606 2.7.7.6 | Details
15 5FLM 1 A DNA-DIRECTED RNA POLYMERASE 9913 2.7.7.6 | Details