Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 27654
95 % 2 15 5212
90 % 2 15 5256
70 % 2 15 5204
50 % 2 15 5048
40 % 2 15 4912
30 % 2 15 4730
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4510
95 % 2 15 5270
90 % 2 15 5394
70 % 151 213 220
50 % 151 213 235
40 % 151 213 253
30 % 151 213 269
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4357
95 % 2 15 5188
90 % 2 15 5237
70 % 2 15 5178
50 % 2 15 4994
40 % 2 15 4854
30 % 2 15 4674
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4498
95 % 2 15 5327
90 % 2 15 5370
70 % 2 15 5325
50 % 2 15 5126
40 % 2 15 4997
30 % 2 15 4796
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7461
95 % 2 15 5253
90 % 2 15 5294
70 % 2 15 5234
50 % 140 170 354
40 % 148 178 350
30 % 148 193 326
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7858
95 % 2 15 5354
90 % 2 15 5407
70 % 2 15 5356
50 % 2 15 5156
40 % 4 20 3684
30 % 4 20 3594
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 3812
95 % 3 16 4000
90 % 3 16 4068
70 % 3 16 4054
50 % 3 16 3959
40 % 4 18 3351
30 % 4 18 3279
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60607
95 % 2 15 5225
90 % 2 15 5267
70 % 2 15 5212
50 % 2 15 5024
40 % 152 214 246
30 % 152 214 262
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5293
95 % 2 16 4932
90 % 2 16 4990
70 % 2 16 4940
50 % 2 16 4792
40 % 2 16 4661
30 % 2 16 4518
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3316
95 % 3 16 4030
90 % 3 16 4098
70 % 3 16 4076
50 % 81 110 501
40 % 81 110 534
30 % 81 110 553
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4225
95 % 2 16 5052
90 % 2 16 5095
70 % 2 16 5047
50 % 2 16 4891
40 % 2 16 4751
30 % 150 213 272
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5206
95 % 2 15 5320
90 % 2 15 5365
70 % 2 15 5218
50 % 2 15 5030
40 % 2 15 4888
30 % 2 15 4707

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6O9L 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 9606
2 6DRD 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 9606
3 6GML 10 L Uncharacterized protein 9823
4 6GMH 12 L RPB12 9823
5 6EXV 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 9823
6 5OIK 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 9913
7 5IY6 12 L DNA-directed RNA polymerase II subunit RPB12 9606
8 5IY7 12 L DNA-directed RNA polymerase II subunit RPB12 9606
9 5IY8 12 L DNA-directed RNA polymerase II subunit RPB12 9606
10 5IY9 12 L DNA-directed RNA polymerase II subunit RPB12 9606
11 5IYA 12 L DNA-directed RNA polymerase II subunit RPB12 9606
12 5IYB 12 L DNA-directed RNA polymerase II subunit RPB12 9606
13 5IYC 12 L DNA-directed RNA polymerase II subunit RPB12 9606
14 5IYD 12 L DNA-directed RNA polymerase II subunit RPB12 9606
15 5FLM 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 9913