Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 26290
95 % 2 15 5314
90 % 2 15 5365
70 % 2 15 5295
50 % 2 15 5261
40 % 2 15 4962
30 % 2 15 4764
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4599
95 % 2 15 5543
90 % 2 15 5595
70 % 151 213 236
50 % 151 213 245
40 % 151 213 260
30 % 151 213 279
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4669
95 % 2 15 5502
90 % 2 15 5559
70 % 2 15 5491
50 % 2 15 5311
40 % 2 15 5168
30 % 2 15 4936
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4707
95 % 2 15 5454
90 % 2 15 5596
70 % 2 15 5441
50 % 2 15 5251
40 % 2 15 5111
30 % 2 15 4894
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7480
95 % 2 15 5421
90 % 2 15 5468
70 % 2 15 5407
50 % 140 170 365
40 % 148 178 353
30 % 148 193 337
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7948
95 % 2 15 5353
90 % 2 15 5394
70 % 2 15 5382
50 % 2 15 5180
40 % 4 20 3696
30 % 4 20 3611
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 3773
95 % 3 16 4021
90 % 3 16 4102
70 % 3 16 4071
50 % 3 16 3979
40 % 4 18 3411
30 % 4 18 3333
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61398
95 % 2 15 5354
90 % 2 15 5443
70 % 2 15 5330
50 % 2 15 5181
40 % 152 214 253
30 % 152 214 272
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5347
95 % 2 16 4787
90 % 2 16 4863
70 % 2 16 4804
50 % 2 16 4918
40 % 2 16 4805
30 % 2 16 4640
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3326
95 % 3 16 4032
90 % 3 16 4122
70 % 3 16 4091
50 % 81 110 510
40 % 81 110 543
30 % 81 110 567
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4258
95 % 2 16 5090
90 % 2 16 5161
70 % 2 16 5090
50 % 2 16 4917
40 % 2 16 4804
30 % 150 213 284
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5435
95 % 2 15 5537
90 % 2 15 5590
70 % 2 15 5529
50 % 2 15 5342
40 % 139 169 386
30 % 139 184 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2C35 1 A, C, E, G DNA-DIRECTED RNA POLYMERASE II 16 KDA POLYPEPTIDE 9606 2.7.7.6 | Details
2 6O9L 4 D DNA-directed RNA polymerase II subunit RPB4 9606
3 6DRD 4 D DNA-directed RNA polymerase II subunit RPB4 9606
4 6GML 20 D RNA polymerase II subunit D 9823
5 6GMH 4 D RNA polymerase II subunit D 9823
6 6EXV 4 D DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 9823
7 5OIK 4 D Polymerase (RNA) II (DNA directed) polypeptide D 9913
8 5IY6 4 D DNA-directed RNA polymerase II subunit RPB4 9606
9 5IY7 4 D DNA-directed RNA polymerase II subunit RPB4 9606
10 5IY8 4 D DNA-directed RNA polymerase II subunit RPB4 9606
11 5IY9 4 D DNA-directed RNA polymerase II subunit RPB4 9606
12 5IYA 4 D DNA-directed RNA polymerase II subunit RPB4 9606
13 5IYB 4 D DNA-directed RNA polymerase II subunit RPB4 9606
14 5IYC 4 D DNA-directed RNA polymerase II subunit RPB4 9606
15 5IYD 4 D DNA-directed RNA polymerase II subunit RPB4 9606
16 5FLM 4 D DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 9913