6DRD

RNA Pol II(G)


Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 26282
95 % 3 16 5299
90 % 3 16 5369
70 % 3 16 5355
50 % 3 16 5196
40 % 3 16 5063
30 % 3 16 4928
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4766
95 % 3 16 5406
90 % 3 16 5469
70 % 168 230 264
50 % 168 230 294
40 % 168 230 307
30 % 168 230 320
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4653
95 % 3 16 5738
90 % 3 16 5788
70 % 3 16 5756
50 % 3 16 5558
40 % 3 16 5394
30 % 3 16 5191
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4668
95 % 3 16 5758
90 % 3 16 5381
70 % 3 16 5776
50 % 3 16 5205
40 % 3 16 5415
30 % 3 16 5208
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8534
95 % 3 16 5302
90 % 3 16 5371
70 % 3 16 5356
50 % 148 178 385
40 % 148 178 405
30 % 160 205 364
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8984
95 % 3 16 5373
90 % 3 16 5440
70 % 3 16 5426
50 % 3 16 5258
40 % 5 21 3932
30 % 5 21 3836
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 15 4065
95 % 4 17 4132
90 % 4 17 4193
70 % 4 17 4163
50 % 4 17 4302
40 % 5 19 3612
30 % 5 19 3547
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 80236
95 % 3 16 5569
90 % 3 16 5623
70 % 3 16 5610
50 % 3 16 5434
40 % 169 231 305
30 % 169 231 319
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 6182
95 % 3 17 5165
90 % 3 17 5229
70 % 3 17 5215
50 % 3 17 5062
40 % 3 17 4950
30 % 3 17 4806
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 17 3450
95 % 4 17 4279
90 % 4 17 4345
70 % 4 17 4316
50 % 82 111 581
40 % 82 111 618
30 % 82 111 641
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 17 4249
95 % 3 17 5053
90 % 3 17 5124
70 % 3 17 5107
50 % 3 17 4956
40 % 3 17 4836
30 % 167 230 323
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 5355
95 % 3 16 5554
90 % 3 16 5387
70 % 3 16 5592
50 % 3 16 5211
40 % 3 16 5260
30 % 3 16 4941

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2C35 1 A, C, E, G DNA-DIRECTED RNA POLYMERASE II 16 KDA POLYPEPTIDE 9606 2.7.7.6 | Details
2 6TED 4 D RNA polymerase II subunit D 9823
3 6O9L 4 D DNA-directed RNA polymerase II subunit RPB4 9606
4 6DRD 4 D DNA-directed RNA polymerase II subunit RPB4 9606
5 6GML 20 D RNA polymerase II subunit D 9823
6 6GMH 4 D RNA polymerase II subunit D 9823
7 6EXV 4 D DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 9823
8 5OIK 4 D Polymerase (RNA) II (DNA directed) polypeptide D 9913
9 5IY6 4 D DNA-directed RNA polymerase II subunit RPB4 9606
10 5IY7 4 D DNA-directed RNA polymerase II subunit RPB4 9606
11 5IY8 4 D DNA-directed RNA polymerase II subunit RPB4 9606
12 5IY9 4 D DNA-directed RNA polymerase II subunit RPB4 9606
13 5IYA 4 D DNA-directed RNA polymerase II subunit RPB4 9606
14 5IYB 4 D DNA-directed RNA polymerase II subunit RPB4 9606
15 5IYC 4 D DNA-directed RNA polymerase II subunit RPB4 9606
16 5IYD 4 D DNA-directed RNA polymerase II subunit RPB4 9606
17 5FLM 4 D DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 9913