Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 22530
95 % 2 15 5507
90 % 2 15 5541
70 % 2 15 5477
50 % 2 15 5172
40 % 2 15 5050
30 % 2 15 4853
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4665
95 % 2 15 5353
90 % 2 15 5408
70 % 151 213 237
50 % 151 213 250
40 % 151 213 265
30 % 151 213 284
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4571
95 % 2 15 5499
90 % 2 15 5532
70 % 2 15 5473
50 % 2 15 5279
40 % 2 15 5143
30 % 2 15 4936
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4666
95 % 2 15 5354
90 % 2 15 5409
70 % 2 15 5344
50 % 2 15 5140
40 % 2 15 5013
30 % 2 15 4824
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7812
95 % 2 15 5387
90 % 2 15 5440
70 % 2 15 5598
50 % 140 170 368
40 % 148 178 358
30 % 148 193 343
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7871
95 % 2 15 5481
90 % 2 15 5501
70 % 2 15 5437
50 % 2 15 5241
40 % 4 20 3732
30 % 4 20 3641
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 3847
95 % 3 16 4048
90 % 3 16 4208
70 % 3 16 4195
50 % 3 16 4084
40 % 4 18 3431
30 % 4 18 3358
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75100
95 % 2 15 5457
90 % 2 15 5496
70 % 2 15 5432
50 % 2 15 5234
40 % 152 214 262
30 % 152 214 280
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5580
95 % 2 16 4988
90 % 2 16 5065
70 % 2 16 4998
50 % 2 16 4834
40 % 2 16 4707
30 % 2 16 4575
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3394
95 % 3 16 4035
90 % 3 16 4103
70 % 3 16 4088
50 % 81 110 521
40 % 81 110 556
30 % 81 110 577
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4323
95 % 2 16 4989
90 % 2 16 5066
70 % 2 16 4999
50 % 2 16 4844
40 % 2 16 4714
30 % 150 213 286
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5576
95 % 2 15 5462
90 % 2 15 5500
70 % 2 15 5436
50 % 2 15 5240
40 % 2 15 5109
30 % 2 15 4908

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2C35 1 A, C, E, G DNA-DIRECTED RNA POLYMERASE II 16 KDA POLYPEPTIDE 9606 2.7.7.6 | Details
2 6O9L 4 D DNA-directed RNA polymerase II subunit RPB4 9606
3 6DRD 4 D DNA-directed RNA polymerase II subunit RPB4 9606
4 6GML 20 D RNA polymerase II subunit D 9823
5 6GMH 4 D RNA polymerase II subunit D 9823
6 6EXV 4 D DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 9823
7 5OIK 4 D Polymerase (RNA) II (DNA directed) polypeptide D 9913
8 5IY6 4 D DNA-directed RNA polymerase II subunit RPB4 9606
9 5IY7 4 D DNA-directed RNA polymerase II subunit RPB4 9606
10 5IY8 4 D DNA-directed RNA polymerase II subunit RPB4 9606
11 5IY9 4 D DNA-directed RNA polymerase II subunit RPB4 9606
12 5IYA 4 D DNA-directed RNA polymerase II subunit RPB4 9606
13 5IYB 4 D DNA-directed RNA polymerase II subunit RPB4 9606
14 5IYC 4 D DNA-directed RNA polymerase II subunit RPB4 9606
15 5IYD 4 D DNA-directed RNA polymerase II subunit RPB4 9606
16 5FLM 4 D DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 9913