6DRD

RNA Pol II(G)


Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 24653
95 % 2 15 5676
90 % 2 15 5720
70 % 2 15 5650
50 % 2 15 5613
40 % 2 15 5289
30 % 2 15 5206
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4955
95 % 2 15 5948
90 % 2 15 5987
70 % 167 229 245
50 % 167 229 258
40 % 167 229 270
30 % 167 229 284
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4941
95 % 2 15 5926
90 % 2 15 5973
70 % 2 15 5875
50 % 2 15 5668
40 % 2 15 5506
30 % 2 15 5258
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4815
95 % 2 15 5670
90 % 2 15 5712
70 % 2 15 5622
50 % 2 15 5415
40 % 2 15 5257
30 % 2 15 5039
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7969
95 % 2 15 5693
90 % 2 15 5856
70 % 2 15 5647
50 % 147 177 374
40 % 158 188 363
30 % 159 204 348
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7968
95 % 2 15 5692
90 % 2 15 5736
70 % 2 15 5646
50 % 2 15 5437
40 % 4 20 3980
30 % 4 20 3889
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 4186
95 % 3 16 4339
90 % 3 16 4395
70 % 3 16 4361
50 % 3 16 4282
40 % 4 18 3625
30 % 4 18 3538
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78750
95 % 2 15 5682
90 % 2 15 5724
70 % 2 15 5632
50 % 2 15 5423
40 % 168 230 266
30 % 168 230 280
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5990
95 % 2 16 5390
90 % 2 16 5441
70 % 2 16 5358
50 % 2 16 5188
40 % 2 16 5058
30 % 2 16 4872
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3665
95 % 3 16 4395
90 % 3 16 4382
70 % 3 16 4419
50 % 81 110 565
40 % 81 110 605
30 % 81 110 622
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4600
95 % 2 16 5381
90 % 2 16 5277
70 % 2 16 5205
50 % 2 16 5181
40 % 2 16 5049
30 % 166 229 286
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5980
95 % 2 15 5815
90 % 2 15 5851
70 % 2 15 5764
50 % 2 15 5557
40 % 2 15 5398
30 % 2 15 5163

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6O9L 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 9606
2 6DRD 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 9606
3 6GML 5 F RNA polymerase II subunit F 9823
4 6GMH 6 F RNA polymerase II subunit F 9823
5 6EXV 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 9823
6 5OIK 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 9913
7 5IY6 6 F DNA-directed RNA polymerase II subunit RPB6 9606
8 5IY7 6 F DNA-directed RNA polymerase II subunit RPB6 9606
9 5IY8 6 F DNA-directed RNA polymerase II subunit RPB6 9606
10 5IY9 6 F DNA-directed RNA polymerase II subunit RPB6 9606
11 5IYA 6 F DNA-directed RNA polymerase II subunit RPB6 9606
12 5IYB 6 F DNA-directed RNA polymerase II subunit RPB6 9606
13 5IYC 6 F DNA-directed RNA polymerase II subunit RPB6 9606
14 5IYD 6 F DNA-directed RNA polymerase II subunit RPB6 9606
15 5FLM 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 9913
16 1QKL 1 A DNA-DIRECTED RNA POLYMERASE II 14.4 KD POLYPEPTIDE 9606 2.7.7.6 | Details