6DRD

RNA Pol II(G)


Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 26282
95 % 3 16 5299
90 % 3 16 5369
70 % 3 16 5355
50 % 3 16 5196
40 % 3 16 5063
30 % 3 16 4928
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4766
95 % 3 16 5406
90 % 3 16 5469
70 % 168 230 264
50 % 168 230 294
40 % 168 230 307
30 % 168 230 320
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4653
95 % 3 16 5738
90 % 3 16 5788
70 % 3 16 5756
50 % 3 16 5558
40 % 3 16 5394
30 % 3 16 5191
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4668
95 % 3 16 5758
90 % 3 16 5381
70 % 3 16 5776
50 % 3 16 5205
40 % 3 16 5415
30 % 3 16 5208
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8534
95 % 3 16 5302
90 % 3 16 5371
70 % 3 16 5356
50 % 148 178 385
40 % 148 178 405
30 % 160 205 364
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8984
95 % 3 16 5373
90 % 3 16 5440
70 % 3 16 5426
50 % 3 16 5258
40 % 5 21 3932
30 % 5 21 3836
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 15 4065
95 % 4 17 4132
90 % 4 17 4193
70 % 4 17 4163
50 % 4 17 4302
40 % 5 19 3612
30 % 5 19 3547
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 80236
95 % 3 16 5569
90 % 3 16 5623
70 % 3 16 5610
50 % 3 16 5434
40 % 169 231 305
30 % 169 231 319
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 6182
95 % 3 17 5165
90 % 3 17 5229
70 % 3 17 5215
50 % 3 17 5062
40 % 3 17 4950
30 % 3 17 4806
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 17 3450
95 % 4 17 4279
90 % 4 17 4345
70 % 4 17 4316
50 % 82 111 581
40 % 82 111 618
30 % 82 111 641
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 17 4249
95 % 3 17 5053
90 % 3 17 5124
70 % 3 17 5107
50 % 3 17 4956
40 % 3 17 4836
30 % 167 230 323
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 5355
95 % 3 16 5554
90 % 3 16 5387
70 % 3 16 5592
50 % 3 16 5211
40 % 3 16 5260
30 % 3 16 4941

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1Y14 2 B, D DNA-directed RNA polymerase II 19 kDa polypeptide 4932 2.7.7.6 | Details
2 3PO2 7 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
3 3PO3 7 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
4 2C35 2 B, D, F, H DNA-DIRECTED RNA POLYMERASE II 19 KDA POLYPEPTIDE 9606
5 5XOG 7 G RNA polymerase II subunit 460519
6 4A3E 7 G RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
7 5OT2 7 G DNA-directed RNA polymerase II subunit RPB7 4932
8 4A3D 7 G RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
9 5IP7 7 G DNA-directed RNA polymerase II subunit RPB7 4932
10 4A3F 7 G RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
11 4A93 7 G RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
12 4BY7 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
13 4A3C 7 G RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
14 4A3K 7 G RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
15 4A3L 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
16 4BXX 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
17 4A3G 7 G RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
18 4A3B 7 G RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
19 4BBR 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
20 4A3J 7 G RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
21 4A3I 7 G RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
22 4BY1 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
23 4A3M 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
24 5IP9 7 G DNA-directed RNA polymerase II subunit RPB7 4932
25 4BBS 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
26 3HOU 7 G, S DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
27 3HOY 7 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
28 3HOV 7 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
29 5C3E 7 G DNA-directed RNA polymerase II subunit RPB7 4932
30 3HOZ 7 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
31 3HOW 7 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
32 3HOX 7 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
33 2R92 9 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
34 2R7Z 10 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
35 3I4M 7 G DNA-directed RNA polymerase II subunit RPB7 4932
36 3H3V 7 H DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
37 5U5Q 7 G DNA-directed RNA polymerase II subunit RPB7 4932
38 5C4X 7 G DNA-directed RNA polymerase II subunit RPB7 4932
39 2VUM 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932 2.7.7.6 | Details
40 5C44 7 G DNA-directed RNA polymerase II subunit RPB7 4932
41 2R93 8 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
42 3I4N 7 G DNA-directed RNA polymerase II subunit RPB7 4932
43 4BXZ 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932 2.7.7.6 | Details
44 5C4A 7 G DNA-directed RNA polymerase II subunit RPB7 4932
45 3K1F 7 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
46 1WCM 7 G DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE 4932 2.7.7.6 | Details
47 2JA7 10 G, S DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE 4932 2.7.7.6 | Details
48 1Y1W 10 G DNA-directed RNA polymerase II 19 kDa polypeptide 4932 2.7.7.6 | Details
49 3QT1 7 G DNA-directed RNA polymerase II subunit RPB7 4932 2.7.7.6 | Details
50 5X50 7 G RNA polymerase II subunit 460519
51 2JA8 7 G DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE 4932 2.7.7.6 | Details
52 2JA5 7 G DNA-directed RNA polymerase II subunit RPB7 4932
53 2B63 8 G DNA-directed RNA polymerase II 19 kDa polypeptide 4932 2.7.7.6 | Details
54 1Y1V 7 G DNA-directed RNA polymerase II 19 kDa polypeptide 4932 2.7.7.6 | Details
55 3H0G 7 G, S DNA-directed RNA polymerase II subunit rpb7 4896
56 3FKI 7 G DNA-directed RNA polymerase II subunit RPB7 4932
57 1Y1Y 9 G DNA-directed RNA polymerase II 19 kDa polypeptide 4932 2.7.7.6 | Details
58 2JA6 7 G DNA-DIRECTED RNA POLYMERASE II 19KDA POLYPEPTIDE 4932 2.7.7.6 | Details
59 1Y77 10 G DNA-directed RNA polymerase II 19 kDa polypeptide 4932 2.7.7.6 | Details
60 5X51 7 G, S RNA polymerase II subunit 460519
61 5X4Z 7 G, S RNA polymerase II subunit 460519
62 6TED 7 G RNA polymerase II subunit G 9823
63 6O9L 7 G DNA-directed RNA polymerase II subunit RPB7 9606
64 6J4W 7 G RNA polymerase II subunit 460519
65 6J4X 7 G RNA polymerase II subunit 460519
66 6J4Y 7 G RNA polymerase II subunit 460519
67 6J4Z 7 G RNA polymerase II subunit 460519
68 6J50 7 G RNA polymerase II subunit 460519
69 6J51 7 G RNA polymerase II subunit 460519
70 6I84 13 G DNA-directed RNA polymerase II subunit RPB7 4932
71 6IR9 7 G RNA polymerase II subunit 460519
72 6INQ 7 G RNA polymerase II subunit 460519
73 6GYK 7 G DNA-directed RNA polymerase II subunit RPB7 4932
74 6GYL 7 G DNA-directed RNA polymerase II subunit RPB7 4932
75 6GYM 15 G DNA-directed RNA polymerase II subunit RPB7 4932
76 6A5O 7 G RNA polymerase II subunit 460519
77 6A5P 7 G RNA polymerase II subunit 460519
78 6A5R 7 G RNA polymerase II subunit 460519
79 6A5T 7 G RNA polymerase II subunit 460519
80 6A5U 7 G RNA polymerase II subunit 460519
81 6A5L 7 G RNA polymerase II subunit 460519
82 6DRD 7 G DNA-directed RNA polymerase II subunit RPB7 9606
83 6GML 21 G RNA polymerase II subunit G 9823
84 6GMH 7 G RNA polymerase II subunit G 9823
85 6EXV 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 9823
86 5OQM 7 G DNA-directed RNA polymerase II subunit RPB7 4932
87 5OQJ 7 G DNA-directed RNA polymerase II subunit RPB7 4932
88 5OIK 7 G DNA-directed RNA polymerase II subunit RPB7 9913
89 5XON 7 G RNA polymerase II subunit 460519
90 5VVS 7 G DNA-directed RNA polymerase II subunit RPB7 4932
91 5VVR 7 G DNA-directed RNA polymerase II subunit RPB7 4932
92 5U0S 23 g RNA polymerase II subunit Rpb7 4896
93 5SVA 7 G DNA-directed RNA polymerase II subunit RPB7 4932
94 5IY6 7 G DNA-directed RNA polymerase II subunit RPB7 9606
95 5IY7 7 G DNA-directed RNA polymerase II subunit RPB7 9606
96 5IY8 7 G DNA-directed RNA polymerase II subunit RPB7 9606
97 5IY9 7 G DNA-directed RNA polymerase II subunit RPB7 9606
98 5IYA 7 G DNA-directed RNA polymerase II subunit RPB7 9606
99 5IYB 7 G DNA-directed RNA polymerase II subunit RPB7 9606
100 5IYC 7 G DNA-directed RNA polymerase II subunit RPB7 9606
101 5IYD 7 G DNA-directed RNA polymerase II subunit RPB7 9606
102 5FYW 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
103 5FZ5 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
104 5FMF 9 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
105 5FLM 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 9913
106 4V1N 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
107 4V1O 7 G DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 4932
108 3J1N 7 G DNA-directed RNA polymerase II subunit RPB7 4932
109 3J0K 7 G DNA-directed RNA polymerase II 19 kDa polypeptide 9606 2.7.7.6 | Details
110 1PQV 7 G DNA-directed RNA polymerase II 19 kDa polypeptide 4932 2.7.7.6 | Details
111 1NT9 7 G DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE 4932 2.7.7.6 | Details