Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 26290
95 % 2 15 5314
90 % 2 15 5365
70 % 2 15 5295
50 % 2 15 5261
40 % 2 15 4962
30 % 2 15 4764
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4599
95 % 2 15 5543
90 % 2 15 5595
70 % 151 213 236
50 % 151 213 245
40 % 151 213 260
30 % 151 213 279
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4669
95 % 2 15 5502
90 % 2 15 5559
70 % 2 15 5491
50 % 2 15 5311
40 % 2 15 5168
30 % 2 15 4936
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4707
95 % 2 15 5454
90 % 2 15 5596
70 % 2 15 5441
50 % 2 15 5251
40 % 2 15 5111
30 % 2 15 4894
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7480
95 % 2 15 5421
90 % 2 15 5468
70 % 2 15 5407
50 % 140 170 365
40 % 148 178 353
30 % 148 193 337
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7948
95 % 2 15 5353
90 % 2 15 5394
70 % 2 15 5382
50 % 2 15 5180
40 % 4 20 3696
30 % 4 20 3611
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 3773
95 % 3 16 4021
90 % 3 16 4102
70 % 3 16 4071
50 % 3 16 3979
40 % 4 18 3411
30 % 4 18 3333
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61398
95 % 2 15 5354
90 % 2 15 5443
70 % 2 15 5330
50 % 2 15 5181
40 % 152 214 253
30 % 152 214 272
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5347
95 % 2 16 4787
90 % 2 16 4863
70 % 2 16 4804
50 % 2 16 4918
40 % 2 16 4805
30 % 2 16 4640
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3326
95 % 3 16 4032
90 % 3 16 4122
70 % 3 16 4091
50 % 81 110 510
40 % 81 110 543
30 % 81 110 567
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4258
95 % 2 16 5090
90 % 2 16 5161
70 % 2 16 5090
50 % 2 16 4917
40 % 2 16 4804
30 % 150 213 284
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5435
95 % 2 15 5537
90 % 2 15 5590
70 % 2 15 5529
50 % 2 15 5342
40 % 139 169 386
30 % 139 184 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TWF 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
2 3S14 7 I DNA-directed RNA polymerase II subunit RPB9 4932
3 3CQZ 7 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
4 3PO2 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
5 3RZO 7 I DNA-directed RNA polymerase II subunit RPB9 4932
6 3PO3 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
7 5XOG 9 I DNA-directed RNA polymerase subunit 460519
8 3S1M 7 I DNA-directed RNA polymerase II subunit RPB9 4932
9 4A3E 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
10 5OT2 9 I DNA-directed RNA polymerase II subunit RPB9 4932
11 3S1R 7 I DNA-directed RNA polymerase II subunit RPB9 4932
12 4A3D 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
13 3S1N 7 I DNA-directed RNA polymerase II subunit RPB9 4932
14 5IP7 9 I DNA-directed RNA polymerase II subunit RPB9 4932
15 4A3F 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
16 4A93 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
17 1K83 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 1I50 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
19 4BY7 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
20 3S2D 7 I DNA-directed RNA polymerase II subunit RPB9 4932
21 4A3C 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
22 4A3K 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
23 3S15 7 I DNA-directed RNA polymerase II subunit RPB9 4932
24 4A3L 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
25 4BXX 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
26 3S1Q 7 I DNA-directed RNA polymerase II subunit RPB9 4932
27 3S16 7 I DNA-directed RNA polymerase II subunit RPB9 4932
28 3S17 7 I DNA-directed RNA polymerase II subunit RPB9 4932
29 4A3G 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
30 4A3B 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
31 4BBR 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
32 2NVQ 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
33 3RZD 7 I DNA-directed RNA polymerase II subunit RPB9 4932
34 4A3J 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
35 3S2H 7 I DNA-directed RNA polymerase II subunit RPB9 4932
36 3M3Y 7 I DNA-directed RNA polymerase II subunit RPB9 4932
37 4A3I 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
38 6BM4 7 I DNA-directed RNA polymerase II subunit RPB9 4932
39 4BY1 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
40 4A3M 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
41 6BLP 7 I DNA-directed RNA polymerase II subunit RPB9 4932
42 4Y7N 7 I DNA-directed RNA polymerase II subunit RPB9 4932
43 5IP9 9 I DNA-directed RNA polymerase II subunit RPB9 4932
44 1I3Q 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
45 4BBS 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
46 6BLO 7 I DNA-directed RNA polymerase II subunit RPB9 4932
47 1TWC 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
48 4Y52 7 I DNA-directed RNA polymerase II subunit RPB9 4932
49 6BQF 7 I DNA-directed RNA polymerase II subunit RPB9 4932
50 3HOU 9 I, U DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
51 3HOY 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
52 3HOV 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
53 6BM2 7 I DNA-directed RNA polymerase II subunit RPB9 4932
54 1TWA 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
55 5C3E 9 I DNA-directed RNA polymerase II subunit RPB9 4932
56 5W51 7 I DNA-directed RNA polymerase II subunit RPB9 4932
57 2NVT 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
58 3HOZ 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
59 3HOW 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
60 3HOX 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
61 1I6H 9 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
62 2R92 11 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
63 5W4U 7 I DNA-directed RNA polymerase II subunit RPB9 4932
64 2R7Z 12 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
65 1R9T 10 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
66 3I4M 9 I DNA-directed RNA polymerase II subunit RPB9 4932
67 3H3V 9 J DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
68 5U5Q 9 I DNA-directed RNA polymerase II subunit RPB9 4932
69 1TWH 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
70 2NVY 7 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
71 2E2J 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
72 5C4X 9 I DNA-directed RNA polymerase II subunit RPB9 4932
73 2VUM 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932 2.7.7.6 | Details
74 5C44 9 I DNA-directed RNA polymerase II subunit RPB9 4932
75 3M4O 7 I DNA-directed RNA polymerase II subunit RPB9 4932
76 5C4J 7 I DNA-directed RNA polymerase II subunit RPB9 4932
77 2R93 10 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
78 1TWG 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
79 3GTM 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
80 3I4N 9 I DNA-directed RNA polymerase II subunit RPB9 4932
81 2E2I 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
82 3GTL 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
83 4BXZ 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932 2.7.7.6 | Details
84 3GTK 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
85 5C4A 9 I DNA-directed RNA polymerase II subunit RPB9 4932
86 3K1F 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
87 3GTJ 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
88 3GTG 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
89 2YU9 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
90 1WCM 9 I DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
91 2JA7 12 I, U DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
92 4X6A 7 I DNA-directed RNA polymerase II subunit RPB9 4932
93 4X67 7 I DNA-directed RNA polymerase II subunit RPB9 4932
94 1Y1W 12 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
95 3K7A 7 I DNA-directed RNA polymerase II subunit RPB9 4932
96 5X50 9 I DNA-directed RNA polymerase subunit 460519
97 2JA8 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
98 2JA5 9 I DNA-directed RNA polymerase II subunit RPB9 4932
99 2NVX 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
100 2B63 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
101 3GTQ 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
102 3GTP 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
103 1Y1V 9 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
104 3GTO 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
105 3H0G 9 I, U DNA-directed RNA polymerase II subunit RPB9 4896
106 3FKI 9 I DNA-directed RNA polymerase II subunit RPB9 4932
107 1Y1Y 11 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
108 1SFO 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
109 2E2H 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
110 2JA6 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
111 2NVZ 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
112 1Y77 12 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
113 1NIK 9 I DNA-directed RNA polymerase II, chain RPB9 4932 2.7.7.6 | Details
114 1R9S 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
115 1R5U 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
116 2B8K 9 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
117 5X51 9 I, U DNA-directed RNA polymerase subunit 460519
118 5X4Z 9 I, U DNA-directed RNA polymerase subunit 460519
119 6O9L 9 I DNA-directed RNA polymerase II subunit RPB9 9606
120 6O6C 7 G DNA-directed RNA polymerase II subunit RPB9 4932
121 6J4W 9 I DNA-directed RNA polymerase subunit 460519
122 6J4X 9 I DNA-directed RNA polymerase subunit 460519
123 6J4Y 9 I DNA-directed RNA polymerase subunit 460519
124 6J4Z 9 I DNA-directed RNA polymerase subunit 460519
125 6J50 9 I DNA-directed RNA polymerase subunit 460519
126 6J51 9 I DNA-directed RNA polymerase subunit 460519
127 6I84 15 I DNA-directed RNA polymerase II subunit RPB9 4932
128 6IR9 9 I DNA-directed RNA polymerase subunit 460519
129 6INQ 9 I DNA-directed RNA polymerase subunit 460519
130 6GYK 9 I DNA-directed RNA polymerase II subunit RPB9 4932
131 6GYL 9 I DNA-directed RNA polymerase II subunit RPB9 4932
132 6GYM 17 I DNA-directed RNA polymerase II subunit RPB9 4932
133 6A5O 9 I DNA-directed RNA polymerase subunit 460519
134 6A5P 9 I DNA-directed RNA polymerase subunit 460519
135 6A5R 9 I DNA-directed RNA polymerase subunit 460519
136 6A5T 9 I DNA-directed RNA polymerase subunit 460519
137 6A5U 9 I DNA-directed RNA polymerase subunit 460519
138 6A5L 9 I DNA-directed RNA polymerase subunit 460519
139 6DRD 9 I DNA-directed RNA polymerase II subunit RPB9 9606
140 6GML 7 I DNA-directed RNA polymerase II subunit RPB9 9823
141 6GMH 9 I DNA-directed RNA polymerase II subunit RPB9 9823
142 6EXV 9 I DNA-directed RNA polymerase II subunit RPB9 9823
143 5OQM 9 I DNA-directed RNA polymerase II subunit RPB9 4932
144 5OQJ 9 I DNA-directed RNA polymerase II subunit RPB9 4932
145 5OIK 9 I DNA-directed RNA polymerase II subunit RPB9 9913
146 5XON 9 I DNA-directed RNA polymerase subunit 460519
147 5VVS 9 I DNA-directed RNA polymerase II subunit RPB9 4932
148 5VVR 9 I DNA-directed RNA polymerase II subunit RPB9 4932
149 5U0S 25 i RNA polymerase II subunit Rpb9 4896
150 5SVA 9 I DNA-directed RNA polymerase II subunit RPB9 4932
151 5IY6 9 I DNA-directed RNA polymerase II subunit RPB9 9606
152 5IY7 9 I DNA-directed RNA polymerase II subunit RPB9 9606
153 5IY8 9 I DNA-directed RNA polymerase II subunit RPB9 9606
154 5IY9 9 I DNA-directed RNA polymerase II subunit RPB9 9606
155 5IYA 9 I DNA-directed RNA polymerase II subunit RPB9 9606
156 5IYB 9 I DNA-directed RNA polymerase II subunit RPB9 9606
157 5IYC 9 I DNA-directed RNA polymerase II subunit RPB9 9606
158 5IYD 9 I DNA-directed RNA polymerase II subunit RPB9 9606
159 5FYW 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
160 5FZ5 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
161 5FMF 11 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
162 5FLM 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 9913
163 4V1M 7 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
164 4V1N 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
165 4V1O 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
166 3J1N 9 I DNA-directed RNA polymerase II subunit RPB9 4932
167 3J0K 9 I DNA-directed RNA polymerase II subunit 9 9606 2.7.7.6 | Details
168 1PQV 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
169 1NT9 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details