6DRD

RNA Pol II(G)


Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 24808
95 % 3 16 5461
90 % 3 16 5203
70 % 3 16 5133
50 % 3 16 4997
40 % 3 16 4876
30 % 3 16 4740
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4529
95 % 3 16 5593
90 % 3 16 5648
70 % 168 230 245
50 % 168 230 258
40 % 168 230 271
30 % 168 230 286
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4635
95 % 3 16 5697
90 % 3 16 5743
70 % 3 16 5375
50 % 3 16 5203
40 % 3 16 5072
30 % 3 16 4905
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 4579
95 % 3 16 5128
90 % 3 16 5191
70 % 3 16 5112
50 % 3 16 4973
40 % 3 16 4859
30 % 3 16 4723
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8625
95 % 3 16 5485
90 % 3 16 5346
70 % 3 16 5455
50 % 148 178 371
40 % 148 178 391
30 % 160 205 351
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 8885
95 % 3 16 5641
90 % 3 16 5489
70 % 3 16 5613
50 % 3 16 5397
40 % 5 21 3795
30 % 5 21 3730
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 15 3990
95 % 4 17 4156
90 % 4 17 4058
70 % 4 17 4197
50 % 4 17 4117
40 % 5 19 3502
30 % 5 19 3445
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78984
95 % 3 16 5405
90 % 3 16 5474
70 % 3 16 5384
50 % 3 16 5214
40 % 169 231 264
30 % 169 231 280
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5796
95 % 3 17 4989
90 % 3 17 5053
70 % 3 17 4985
50 % 3 17 4848
40 % 3 17 4745
30 % 3 17 4608
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 17 3400
95 % 4 17 4009
90 % 4 17 4075
70 % 4 17 4046
50 % 82 111 558
40 % 82 111 595
30 % 82 111 616
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 17 4215
95 % 3 17 4966
90 % 3 17 5024
70 % 3 17 4959
50 % 3 17 4825
40 % 3 17 4724
30 % 167 230 287
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 5202
95 % 3 16 5640
90 % 3 16 5691
70 % 3 16 5612
50 % 3 16 5396
40 % 147 177 392
30 % 148 193 379

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TWF 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
2 3S14 7 I DNA-directed RNA polymerase II subunit RPB9 4932
3 3CQZ 7 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
4 3PO2 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
5 3RZO 7 I DNA-directed RNA polymerase II subunit RPB9 4932
6 3PO3 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
7 5XOG 9 I DNA-directed RNA polymerase subunit 460519
8 3S1M 7 I DNA-directed RNA polymerase II subunit RPB9 4932
9 4A3E 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
10 5OT2 9 I DNA-directed RNA polymerase II subunit RPB9 4932
11 3S1R 7 I DNA-directed RNA polymerase II subunit RPB9 4932
12 4A3D 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
13 3S1N 7 I DNA-directed RNA polymerase II subunit RPB9 4932
14 5IP7 9 I DNA-directed RNA polymerase II subunit RPB9 4932
15 4A3F 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
16 4A93 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
17 1K83 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 1I50 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
19 4BY7 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
20 3S2D 7 I DNA-directed RNA polymerase II subunit RPB9 4932
21 4A3C 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
22 4A3K 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
23 3S15 7 I DNA-directed RNA polymerase II subunit RPB9 4932
24 4A3L 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
25 4BXX 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
26 3S1Q 7 I DNA-directed RNA polymerase II subunit RPB9 4932
27 3S16 7 I DNA-directed RNA polymerase II subunit RPB9 4932
28 3S17 7 I DNA-directed RNA polymerase II subunit RPB9 4932
29 4A3G 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
30 4A3B 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
31 4BBR 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
32 2NVQ 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
33 3RZD 7 I DNA-directed RNA polymerase II subunit RPB9 4932
34 4A3J 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
35 3S2H 7 I DNA-directed RNA polymerase II subunit RPB9 4932
36 3M3Y 7 I DNA-directed RNA polymerase II subunit RPB9 4932
37 4A3I 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
38 6BM4 7 I DNA-directed RNA polymerase II subunit RPB9 4932
39 4BY1 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
40 4A3M 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
41 6UPZ 10 I DNA-directed RNA polymerase II subunit RPB9 4932
42 6BLP 7 I DNA-directed RNA polymerase II subunit RPB9 4932
43 4Y7N 7 I DNA-directed RNA polymerase II subunit RPB9 4932
44 5IP9 9 I DNA-directed RNA polymerase II subunit RPB9 4932
45 1I3Q 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
46 4BBS 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
47 6BLO 7 I DNA-directed RNA polymerase II subunit RPB9 4932
48 1TWC 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
49 4Y52 7 I DNA-directed RNA polymerase II subunit RPB9 4932
50 6UQ2 10 I DNA-directed RNA polymerase II subunit RPB9 4932
51 6BQF 7 I DNA-directed RNA polymerase II subunit RPB9 4932
52 3HOU 9 I, U DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
53 3HOY 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
54 3HOV 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
55 6BM2 7 I DNA-directed RNA polymerase II subunit RPB9 4932
56 6UPX 10 I DNA-directed RNA polymerase II subunit RPB9 4932
57 1TWA 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
58 5C3E 9 I DNA-directed RNA polymerase II subunit RPB9 4932
59 6UPY 10 I DNA-directed RNA polymerase II subunit RPB9 4932
60 5W51 7 I DNA-directed RNA polymerase II subunit RPB9 4932
61 2NVT 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
62 3HOZ 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
63 3HOW 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
64 3HOX 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
65 6UQ3 10 I DNA-directed RNA polymerase II subunit RPB9 4932
66 1I6H 9 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
67 2R92 11 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
68 5W4U 7 I DNA-directed RNA polymerase II subunit RPB9 4932
69 2R7Z 12 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
70 1R9T 10 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
71 3I4M 9 I DNA-directed RNA polymerase II subunit RPB9 4932
72 3H3V 9 J DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
73 6UQ0 10 I DNA-directed RNA polymerase II subunit RPB9 4932
74 5U5Q 9 I DNA-directed RNA polymerase II subunit RPB9 4932
75 1TWH 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
76 2NVY 7 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
77 2E2J 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
78 5C4X 9 I DNA-directed RNA polymerase II subunit RPB9 4932
79 2VUM 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932 2.7.7.6 | Details
80 5C44 9 I DNA-directed RNA polymerase II subunit RPB9 4932
81 6UQ1 10 I DNA-directed RNA polymerase II subunit RPB9 4932
82 3M4O 7 I DNA-directed RNA polymerase II subunit RPB9 4932
83 5C4J 7 I DNA-directed RNA polymerase II subunit RPB9 4932
84 2R93 10 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
85 1TWG 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
86 3GTM 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
87 3I4N 9 I DNA-directed RNA polymerase II subunit RPB9 4932
88 2E2I 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
89 3GTL 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
90 4BXZ 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932 2.7.7.6 | Details
91 3GTK 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
92 5C4A 9 I DNA-directed RNA polymerase II subunit RPB9 4932
93 3K1F 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
94 3GTJ 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
95 3GTG 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
96 2YU9 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
97 1WCM 9 I DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
98 2JA7 12 I, U DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
99 4X6A 7 I DNA-directed RNA polymerase II subunit RPB9 4932
100 4X67 7 I DNA-directed RNA polymerase II subunit RPB9 4932
101 1Y1W 12 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
102 3K7A 7 I DNA-directed RNA polymerase II subunit RPB9 4932
103 5X50 9 I DNA-directed RNA polymerase subunit 460519
104 2JA8 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
105 2JA5 9 I DNA-directed RNA polymerase II subunit RPB9 4932
106 2NVX 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
107 2B63 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
108 3GTQ 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
109 3GTP 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
110 1Y1V 9 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
111 3GTO 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
112 3H0G 9 I, U DNA-directed RNA polymerase II subunit RPB9 4896
113 3FKI 9 I DNA-directed RNA polymerase II subunit RPB9 4932
114 1Y1Y 11 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
115 1SFO 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
116 2E2H 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
117 2JA6 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
118 2NVZ 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
119 1Y77 12 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
120 1NIK 9 I DNA-directed RNA polymerase II, chain RPB9 4932 2.7.7.6 | Details
121 1R9S 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
122 1R5U 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
123 2B8K 9 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
124 5X51 9 I, U DNA-directed RNA polymerase subunit 460519
125 5X4Z 9 I, U DNA-directed RNA polymerase subunit 460519
126 6TED 9 I DNA-directed RNA polymerase II subunit RPB9 9823
127 6O9L 9 I DNA-directed RNA polymerase II subunit RPB9 9606
128 6O6C 7 G DNA-directed RNA polymerase II subunit RPB9 4932
129 6J4W 9 I DNA-directed RNA polymerase subunit 460519
130 6J4X 9 I DNA-directed RNA polymerase subunit 460519
131 6J4Y 9 I DNA-directed RNA polymerase subunit 460519
132 6J4Z 9 I DNA-directed RNA polymerase subunit 460519
133 6J50 9 I DNA-directed RNA polymerase subunit 460519
134 6J51 9 I DNA-directed RNA polymerase subunit 460519
135 6I84 15 I DNA-directed RNA polymerase II subunit RPB9 4932
136 6IR9 9 I DNA-directed RNA polymerase subunit 460519
137 6INQ 9 I DNA-directed RNA polymerase subunit 460519
138 6GYK 9 I DNA-directed RNA polymerase II subunit RPB9 4932
139 6GYL 9 I DNA-directed RNA polymerase II subunit RPB9 4932
140 6GYM 17 I DNA-directed RNA polymerase II subunit RPB9 4932
141 6A5O 9 I DNA-directed RNA polymerase subunit 460519
142 6A5P 9 I DNA-directed RNA polymerase subunit 460519
143 6A5R 9 I DNA-directed RNA polymerase subunit 460519
144 6A5T 9 I DNA-directed RNA polymerase subunit 460519
145 6A5U 9 I DNA-directed RNA polymerase subunit 460519
146 6A5L 9 I DNA-directed RNA polymerase subunit 460519
147 6DRD 9 I DNA-directed RNA polymerase II subunit RPB9 9606
148 6GML 7 I DNA-directed RNA polymerase II subunit RPB9 9823
149 6GMH 9 I DNA-directed RNA polymerase II subunit RPB9 9823
150 6EXV 9 I DNA-directed RNA polymerase II subunit RPB9 9823
151 5OQM 9 I DNA-directed RNA polymerase II subunit RPB9 4932
152 5OQJ 9 I DNA-directed RNA polymerase II subunit RPB9 4932
153 5OIK 9 I DNA-directed RNA polymerase II subunit RPB9 9913
154 5XON 9 I DNA-directed RNA polymerase subunit 460519
155 5VVS 9 I DNA-directed RNA polymerase II subunit RPB9 4932
156 5VVR 9 I DNA-directed RNA polymerase II subunit RPB9 4932
157 5U0S 25 i RNA polymerase II subunit Rpb9 4896
158 5SVA 9 I DNA-directed RNA polymerase II subunit RPB9 4932
159 5IY6 9 I DNA-directed RNA polymerase II subunit RPB9 9606
160 5IY7 9 I DNA-directed RNA polymerase II subunit RPB9 9606
161 5IY8 9 I DNA-directed RNA polymerase II subunit RPB9 9606
162 5IY9 9 I DNA-directed RNA polymerase II subunit RPB9 9606
163 5IYA 9 I DNA-directed RNA polymerase II subunit RPB9 9606
164 5IYB 9 I DNA-directed RNA polymerase II subunit RPB9 9606
165 5IYC 9 I DNA-directed RNA polymerase II subunit RPB9 9606
166 5IYD 9 I DNA-directed RNA polymerase II subunit RPB9 9606
167 5FYW 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
168 5FZ5 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
169 5FMF 11 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
170 5FLM 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 9913
171 4V1M 7 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
172 4V1N 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
173 4V1O 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
174 3J1N 9 I DNA-directed RNA polymerase II subunit RPB9 4932
175 3J0K 9 I DNA-directed RNA polymerase II subunit 9 9606 2.7.7.6 | Details
176 1PQV 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
177 1NT9 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details