Sequence Similarity Clusters for the Entities in PDB 6DRD

Entity #1 | Chains: A
DNA-directed RNA polymerase II subunit RPB1 protein, length: 1970 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 24422
95 % 2 15 5233
90 % 2 15 5269
70 % 2 15 5198
50 % 2 15 4964
40 % 2 15 4841
30 % 2 15 4651
Entity #10 | Chains: J
DNA-directed RNA polymerases I, II, and III subunit RPABC5 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4334
95 % 2 15 5286
90 % 2 15 5193
70 % 151 213 219
50 % 151 213 232
40 % 151 213 251
30 % 151 213 266
Entity #11 | Chains: K
DNA-directed RNA polymerase II subunit RPB11-a protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4615
95 % 2 15 5418
90 % 2 15 5465
70 % 2 15 5406
50 % 2 15 5225
40 % 2 15 5089
30 % 2 15 4871
Entity #12 | Chains: L
DNA-directed RNA polymerases I, II, and III subunit RPABC4 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 15 4584
95 % 2 15 5290
90 % 2 15 5455
70 % 2 15 5395
50 % 2 15 5216
40 % 2 15 5080
30 % 2 15 4862
Entity #13 | Chains: M
DNA-directed RNA polymerase II subunit GRINL1A protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-directed RNA polymerase II subunit RPB2 protein, length: 1174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7259
95 % 2 15 5175
90 % 2 15 5326
70 % 2 15 5149
50 % 140 170 355
40 % 148 178 348
30 % 148 193 326
Entity #3 | Chains: C
DNA-directed RNA polymerase II subunit RPB3 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 10 7199
95 % 2 15 5153
90 % 2 15 5196
70 % 2 15 5123
50 % 2 15 4943
40 % 4 20 3594
30 % 4 20 3511
Entity #4 | Chains: D
DNA-directed RNA polymerase II subunit RPB4 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 14 3657
95 % 3 16 3906
90 % 3 16 3962
70 % 3 16 3930
50 % 3 16 3852
40 % 4 18 3302
30 % 4 18 3230
Entity #5 | Chains: E
DNA-directed RNA polymerases I, II, and III subunit RPABC1 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60544
95 % 2 15 5188
90 % 2 15 5225
70 % 2 15 5159
50 % 2 15 4972
40 % 152 214 245
30 % 152 214 261
Entity #6 | Chains: F
DNA-directed RNA polymerases I, II, and III subunit RPABC2 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5422
95 % 2 16 4915
90 % 2 16 4748
70 % 2 16 5085
50 % 2 16 4754
40 % 2 16 4790
30 % 2 16 4489
Entity #7 | Chains: G
DNA-directed RNA polymerase II subunit RPB7 protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 16 3275
95 % 3 16 3968
90 % 3 16 3971
70 % 3 16 3938
50 % 81 110 500
40 % 81 110 535
30 % 81 110 557
Entity #8 | Chains: H
DNA-directed RNA polymerases I, II, and III subunit RPABC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 16 4163
95 % 2 16 4980
90 % 2 16 5036
70 % 2 16 4966
50 % 2 16 4813
40 % 2 16 4690
30 % 150 213 269
Entity #9 | Chains: I
DNA-directed RNA polymerase II subunit RPB9 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 13 5269
95 % 2 15 5275
90 % 2 15 5244
70 % 2 15 5247
50 % 2 15 4992
40 % 2 15 4875
30 % 2 15 4681

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6O9L 9 I DNA-directed RNA polymerase II subunit RPB9 9606
2 6DRD 9 I DNA-directed RNA polymerase II subunit RPB9 9606
3 6GML 7 I DNA-directed RNA polymerase II subunit RPB9 9823
4 6GMH 9 I DNA-directed RNA polymerase II subunit RPB9 9823
5 6EXV 9 I DNA-directed RNA polymerase II subunit RPB9 9823
6 5OIK 9 I DNA-directed RNA polymerase II subunit RPB9 9913
7 5IY6 9 I DNA-directed RNA polymerase II subunit RPB9 9606
8 5IY7 9 I DNA-directed RNA polymerase II subunit RPB9 9606
9 5IY8 9 I DNA-directed RNA polymerase II subunit RPB9 9606
10 5IY9 9 I DNA-directed RNA polymerase II subunit RPB9 9606
11 5IYA 9 I DNA-directed RNA polymerase II subunit RPB9 9606
12 5IYB 9 I DNA-directed RNA polymerase II subunit RPB9 9606
13 5IYC 9 I DNA-directed RNA polymerase II subunit RPB9 9606
14 5IYD 9 I DNA-directed RNA polymerase II subunit RPB9 9606
15 5FLM 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 9913