Sequence Similarity Clusters for the Entities in PDB 6FF4

Entity #1 | Chains: 1
RNA-binding motif protein, X-linked 2 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 19529
95 % 4 5 17735
90 % 4 5 17414
70 % 4 5 16218
50 % 4 5 14618
40 % 4 5 13613
30 % 4 5 12379
Entity #10 | Chains: C
SNW domain-containing protein 1 protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 10741
95 % 7 11 8010
90 % 7 11 7956
70 % 7 11 7765
50 % 7 11 7321
40 % 7 12 6672
30 % 7 12 6264
Entity #11 | Chains: D
Pleiotropic regulator 1 protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 7417
95 % 7 11 7585
90 % 7 11 7563
70 % 7 11 7408
50 % 7 11 6975
40 % 7 11 6744
30 % 7 11 6332
Entity #12 | Chains: E
Pre-mRNA-processing factor 17 protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 8230
95 % 6 10 8685
90 % 6 10 8923
70 % 6 10 8696
50 % 6 10 8099
40 % 7 12 6280
30 % 7 12 5951
Entity #13 | Chains: L
Cell division cycle 5-like protein protein, length: 802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 6272
95 % 8 12 7480
90 % 8 12 7464
70 % 8 12 7303
50 % 8 12 6900
40 % 8 12 6673
30 % 8 12 6265
Entity #14 | Chains: O
Crooked neck-like protein 1 protein, length: 848 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 6273
95 % 8 12 6950
90 % 8 12 7465
70 % 8 12 7304
50 % 8 12 6901
40 % 8 12 6674
30 % 8 12 6266
Entity #15 | Chains: P
Pre-mRNA-splicing factor RBM22 protein, length: 420 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 7503
95 % 6 10 8427
90 % 6 10 8127
70 % 6 10 8157
50 % 6 10 7655
40 % 6 10 7375
30 % 6 10 6927
Entity #16 | Chains: Q
Protein BUD31 homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 7289
95 % 7 11 7767
90 % 7 11 7733
70 % 7 11 7566
50 % 11 29 2560
40 % 11 29 2593
30 % 11 29 2570
Entity #17 | Chains: R
Spliceosome-associated protein CWC15 homolog protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 6325
95 % 8 12 7557
90 % 8 12 7072
70 % 8 12 7381
50 % 8 12 6957
40 % 8 12 6721
30 % 8 12 6314
Entity #18 | Chains: S
Serine/arginine repetitive matrix protein 2 protein, length: 2752 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 12249
95 % 4 8 12089
90 % 4 8 11915
70 % 4 8 11361
50 % 4 8 10391
40 % 4 8 9799
30 % 4 8 9081
Entity #19 | Chains: V
Peptidyl-prolyl cis-trans isomerase-like 1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 13 5607
95 % 8 13 6401
90 % 8 13 6431
70 % 8 13 6364
50 % 8 13 6080
40 % 8 13 5901
30 % 8 13 5649
Entity #2 | Chains: 2
U2 snRNA rna, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Y
Serine/arginine repetitive matrix protein 1 protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 50638
95 % 1 2 33902
90 % 1 2 32434
70 % 1 2 29089
50 % 1 2 25453
40 % 1 2 23181
30 % 1 2 20682
Entity #21 | Chains: Z
pre mRNA rna, length: 478 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: s
Peptidyl-prolyl cis-trans isomerase CWC27 homolog protein, length: 472 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 24066
95 % 3 4 24303
90 % 3 4 23552
70 % 3 4 21515
50 % 3 4 19025
40 % 3 4 17459
30 % 3 4 15694
Entity #23 | Chains: t
RING finger protein 113A protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 27324
95 % 3 4 21875
90 % 3 4 23951
70 % 3 4 21891
50 % 3 4 17413
40 % 3 4 16050
30 % 3 4 14490
Entity #24 | Chains: u
Splicing factor 3B subunit 1 protein, length: 1304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 7345
95 % 9 11 7868
90 % 9 11 7838
70 % 9 11 7662
50 % 9 11 7218
40 % 9 11 6965
30 % 9 11 6549
Entity #25 | Chains: v
Splicing factor 3B subunit 3 protein, length: 1217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 7141
95 % 10 12 6824
90 % 10 12 6856
70 % 10 12 7144
50 % 11 13 5569
40 % 11 13 5419
30 % 11 13 5189
Entity #26 | Chains: x
Splicing factor 3B subunit 5 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 6055
95 % 10 12 7141
90 % 10 12 7168
70 % 10 12 7008
50 % 10 12 6668
40 % 10 12 6457
30 % 10 12 6103
Entity #27 | Chains: y
PHD finger-like domain-containing protein 5A protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 7311
95 % 10 12 6381
90 % 10 12 6412
70 % 10 12 6340
50 % 10 12 6057
40 % 10 12 5881
30 % 10 12 5627
Entity #28 | Chains: z
Splicing factor 3B subunit 6 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 7468
95 % 9 10 5658
90 % 9 10 5701
70 % 9 10 5633
50 % 9 10 5423
40 % 9 10 5284
30 % 9 10 5053
Entity #3 | Chains: 3
BUD13 homolog protein, length: 619 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 19410
95 % 4 5 17531
90 % 4 5 17231
70 % 4 5 16074
50 % 4 5 14483
40 % 4 5 13479
30 % 4 5 12257
Entity #4 | Chains: 5
U5 snRNA rna, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: 6
U6 snRNA rna, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: 7
Splicing factor 3A subunit 2 protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 12635
95 % 6 7 12869
90 % 6 7 12676
70 % 6 7 12052
50 % 6 7 11016
40 % 6 7 10372
30 % 6 7 9602
Entity #7 | Chains: 8
Splicing factor 3B subunit 2 protein, length: 895 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 9871
95 % 7 8 10627
90 % 7 8 10509
70 % 7 8 10117
50 % 7 8 9373
40 % 7 8 8956
30 % 7 8 8326
Entity #8 | Chains: A
Pre-mRNA-processing-splicing factor 8 protein, length: 2335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 18 3647
95 % 12 18 4248
90 % 12 18 4311
70 % 12 19 4114
50 % 18 41 1706
40 % 18 41 1760
30 % 18 41 1781
Entity #9 | Chains: B
116 kDa U5 small nuclear ribonucleoprotein component protein, length: 972 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 15 4562
95 % 12 18 4389
90 % 12 18 4459
70 % 12 18 4437
50 % 12 19 4067
40 % 12 19 3944
30 % 18 41 1800

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures