Sequence Similarity Clusters for the Entities in PDB 6FF4

Entity #1 | Chains: 1
RNA-binding motif protein, X-linked 2 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 20271
95 % 4 5 18745
90 % 4 5 18362
70 % 4 5 17084
50 % 4 5 15380
40 % 4 5 14307
30 % 4 5 13015
Entity #10 | Chains: C
SNW domain-containing protein 1 protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 12502
95 % 7 11 7802
90 % 7 11 8148
70 % 7 11 7926
50 % 7 11 7417
40 % 7 12 6162
30 % 7 12 5854
Entity #11 | Chains: D
Pleiotropic regulator 1 protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8219
95 % 7 11 8137
90 % 7 11 8150
70 % 7 11 7866
50 % 7 11 7418
40 % 7 11 7150
30 % 7 11 6714
Entity #12 | Chains: E
Pre-mRNA-processing factor 17 protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 8061
95 % 6 10 9115
90 % 6 10 9054
70 % 6 10 8807
50 % 6 10 8200
40 % 7 12 6359
30 % 7 12 6025
Entity #13 | Chains: L
Cell division cycle 5-like protein protein, length: 802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 6148
95 % 8 12 7214
90 % 8 12 7175
70 % 8 12 7079
50 % 8 12 6707
40 % 8 12 6259
30 % 8 12 6143
Entity #14 | Chains: O
Crooked neck-like protein 1 protein, length: 848 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 6419
95 % 8 12 7638
90 % 8 12 7616
70 % 8 12 7439
50 % 8 12 7007
40 % 8 12 6761
30 % 8 12 6349
Entity #15 | Chains: P
Pre-mRNA-splicing factor RBM22 protein, length: 420 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 10 8141
95 % 6 10 9282
90 % 6 10 9213
70 % 6 10 8825
50 % 6 10 8333
40 % 6 10 7892
30 % 6 10 7372
Entity #16 | Chains: Q
Protein BUD31 homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 11 7417
95 % 7 11 7813
90 % 7 11 7891
70 % 7 11 7682
50 % 11 29 2597
40 % 11 29 2622
30 % 11 29 2595
Entity #17 | Chains: R
Spliceosome-associated protein CWC15 homolog protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 6420
95 % 8 12 7639
90 % 8 12 7617
70 % 8 12 7440
50 % 8 12 6608
40 % 8 12 6762
30 % 8 12 6350
Entity #18 | Chains: S
Serine/arginine repetitive matrix protein 2 protein, length: 2752 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 10088
95 % 4 8 10868
90 % 4 8 10729
70 % 4 8 10314
50 % 4 8 9581
40 % 4 8 9127
30 % 4 8 8489
Entity #19 | Chains: V
Peptidyl-prolyl cis-trans isomerase-like 1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 13 5721
95 % 8 13 6527
90 % 8 13 6550
70 % 8 13 6456
50 % 8 13 6172
40 % 8 13 5997
30 % 8 13 5718
Entity #2 | Chains: 2
U2 snRNA rna, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Y
Serine/arginine repetitive matrix protein 1 protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 53777
95 % 1 2 37227
90 % 1 2 35557
70 % 1 2 31644
50 % 1 2 27605
40 % 1 2 25159
30 % 1 2 22343
Entity #21 | Chains: Z
pre mRNA rna, length: 478 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: s
Peptidyl-prolyl cis-trans isomerase CWC27 homolog protein, length: 472 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 22665
95 % 3 4 24126
90 % 3 4 21486
70 % 3 4 19749
50 % 3 4 18883
40 % 3 4 16172
30 % 3 4 14652
Entity #23 | Chains: t
RING finger protein 113A protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 27788
95 % 3 4 19672
90 % 3 4 22934
70 % 3 4 19879
50 % 3 4 17646
40 % 3 4 16274
30 % 3 4 14727
Entity #24 | Chains: u
Splicing factor 3B subunit 1 protein, length: 1304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 7458
95 % 9 11 7987
90 % 9 11 7958
70 % 9 11 7743
50 % 9 11 7292
40 % 9 11 7038
30 % 9 11 6597
Entity #25 | Chains: v
Splicing factor 3B subunit 3 protein, length: 1217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 7294
95 % 10 12 7660
90 % 10 12 7202
70 % 10 12 6949
50 % 11 13 5643
40 % 11 13 5508
30 % 11 13 5258
Entity #26 | Chains: x
Splicing factor 3B subunit 5 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 6205
95 % 10 12 7296
90 % 10 12 7289
70 % 10 12 7148
50 % 10 12 6767
40 % 10 12 6544
30 % 10 12 6189
Entity #27 | Chains: y
PHD finger-like domain-containing protein 5A protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 7495
95 % 10 12 6505
90 % 10 12 6530
70 % 10 12 6434
50 % 10 12 6150
40 % 10 12 5982
30 % 10 12 5701
Entity #28 | Chains: z
Splicing factor 3B subunit 6 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 8420
95 % 9 10 5968
90 % 9 10 6009
70 % 9 10 5929
50 % 9 10 5693
40 % 9 10 5544
30 % 9 10 5289
Entity #3 | Chains: 3
BUD13 homolog protein, length: 619 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 20270
95 % 4 5 18744
90 % 4 5 18361
70 % 4 5 17083
50 % 4 5 15379
40 % 4 5 14306
30 % 4 5 13014
Entity #4 | Chains: 5
U5 snRNA rna, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: 6
U6 snRNA rna, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #6 | Chains: 7
Splicing factor 3A subunit 2 protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 12662
95 % 6 7 12739
90 % 6 7 12538
70 % 6 7 11929
50 % 6 7 10906
40 % 6 7 10258
30 % 6 7 9471
Entity #7 | Chains: 8
Splicing factor 3B subunit 2 protein, length: 895 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 8 10035
95 % 7 8 10798
90 % 7 8 10664
70 % 7 8 10261
50 % 7 8 9529
40 % 7 8 9080
30 % 7 8 8445
Entity #8 | Chains: A
Pre-mRNA-processing-splicing factor 8 protein, length: 2335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 18 3610
95 % 12 18 4469
90 % 12 18 4531
70 % 12 19 4231
50 % 18 41 1756
40 % 18 41 1806
30 % 18 41 1825
Entity #9 | Chains: B
116 kDa U5 small nuclear ribonucleoprotein component protein, length: 972 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 15 4739
95 % 12 18 4262
90 % 12 18 4326
70 % 12 18 4312
50 % 12 19 4045
40 % 12 19 4000
30 % 18 41 1800

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures