6FF7

human Bact spliceosome core structure


Sequence Similarity Clusters for the Entities in PDB 6FF7

Entity #1 | Chains: 1
RNA-binding motif protein, X-linked 2 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 21760
95 % 5 5 20066
90 % 5 5 19613
70 % 5 5 18160
50 % 5 5 16309
40 % 5 5 15117
30 % 5 5 13725
Entity #10 | Chains: C
SNW domain-containing protein 1 protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11251
95 % 8 11 8626
90 % 8 11 8588
70 % 8 11 8339
50 % 8 11 7842
40 % 8 12 6962
30 % 8 12 6590
Entity #11 | Chains: D
Pleiotropic regulator 1 protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 10 8719
95 % 8 11 8763
90 % 8 11 8716
70 % 8 11 8453
50 % 8 11 7951
40 % 8 11 7637
30 % 8 11 7175
Entity #12 | Chains: E
Pre-mRNA-processing factor 17 protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8202
95 % 7 10 8845
90 % 7 10 8798
70 % 7 10 8542
50 % 7 10 8027
40 % 8 12 6833
30 % 8 12 6488
Entity #13 | Chains: L
Cell division cycle 5-like protein protein, length: 802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 6518
95 % 9 12 7592
90 % 9 12 7531
70 % 9 12 7430
50 % 9 12 7070
40 % 9 12 6832
30 % 9 12 6486
Entity #14 | Chains: O
Crooked neck-like protein 1 protein, length: 848 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 6665
95 % 9 12 7789
90 % 9 12 7759
70 % 9 12 7597
50 % 9 12 7212
40 % 9 12 6961
30 % 9 12 6589
Entity #15 | Chains: P
Pre-mRNA-splicing factor RBM22 protein, length: 420 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 9100
95 % 7 10 9270
90 % 7 10 8927
70 % 7 10 8921
50 % 7 10 8337
40 % 7 10 7992
30 % 7 10 7503
Entity #16 | Chains: Q
Protein BUD31 homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 8166
95 % 8 11 8772
90 % 8 11 8728
70 % 8 11 8462
50 % 12 29 2860
40 % 12 29 2867
30 % 12 29 2859
Entity #17 | Chains: R
Spliceosome-associated protein CWC15 homolog protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 6615
95 % 9 12 7682
90 % 9 12 7664
70 % 9 12 7497
50 % 9 12 7134
40 % 9 12 6896
30 % 9 12 6540
Entity #18 | Chains: S
Serine/arginine repetitive matrix protein 2 protein, length: 2752 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11448
95 % 5 8 12518
90 % 5 8 12384
70 % 5 8 11745
50 % 5 8 10778
40 % 5 8 10160
30 % 5 8 9411
Entity #19 | Chains: V
Peptidyl-prolyl cis-trans isomerase-like 1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 6198
95 % 9 13 7004
90 % 9 13 7025
70 % 9 13 6942
50 % 9 13 6644
40 % 9 13 6437
30 % 9 13 6140
Entity #2 | Chains: 2
U2 snRNA rna, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Y
Serine/arginine repetitive matrix protein 1 protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 54354
95 % 2 2 36423
90 % 2 2 34769
70 % 2 2 31014
50 % 2 2 27063
40 % 2 2 24662
30 % 2 2 21954
Entity #21 | Chains: Z
pre-mRNA rna, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: s
Peptidyl-prolyl cis-trans isomerase CWC27 homolog protein, length: 472 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 28589
95 % 4 4 22222
90 % 4 4 21640
70 % 4 4 19932
50 % 4 4 17699
40 % 4 4 16322
30 % 4 4 14767
Entity #23 | Chains: t
RING finger protein 113A protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 25335
95 % 4 4 23664
90 % 4 4 23003
70 % 4 4 21082
50 % 4 4 18666
40 % 4 4 17134
30 % 4 4 15476
Entity #24 | Chains: u
Splicing factor 3B subunit 1 protein, length: 1304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 14 5316
95 % 13 14 6204
90 % 13 14 6246
70 % 13 14 6196
50 % 13 14 5960
40 % 13 14 5808
30 % 13 14 5546
Entity #25 | Chains: v
Splicing factor 3B subunit 3 protein, length: 1217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 13 6016
95 % 13 14 6344
90 % 13 14 6391
70 % 13 14 6535
50 % 14 15 5349
40 % 14 15 5210
30 % 14 15 5047
Entity #26 | Chains: x
Splicing factor 3B subunit 5 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 14 5730
95 % 13 14 6154
90 % 13 14 6553
70 % 13 14 6582
50 % 13 14 6307
40 % 13 14 5991
30 % 13 14 5717
Entity #27 | Chains: y
PHD finger-like domain-containing protein 5A protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 13 5906
95 % 13 14 5987
90 % 13 14 6022
70 % 13 14 5985
50 % 13 14 5861
40 % 13 14 5695
30 % 13 14 5450
Entity #28 | Chains: N,z
Splicing factor 3B subunit 6 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 6313
95 % 12 12 5291
90 % 12 12 5367
70 % 12 12 5338
50 % 12 12 5192
40 % 12 12 5062
30 % 12 12 4920
Entity #29 | Chains: 0
Smad nuclear-interacting protein 1 protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 29648
95 % 4 4 23663
90 % 4 4 23002
70 % 4 4 21080
50 % 4 4 18664
40 % 4 4 15654
30 % 4 4 15474
Entity #3 | Chains: 3
BUD13 homolog protein, length: 619 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 20072
95 % 5 5 19283
90 % 5 5 18929
70 % 5 5 17541
50 % 5 5 15786
40 % 5 5 14607
30 % 5 5 13252
Entity #30 | Chains: 9
Splicing factor 3A subunit 3 protein, length: 501 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 9291
95 % 10 10 9709
90 % 10 10 9625
70 % 10 10 9319
50 % 10 10 8668
40 % 10 10 8307
30 % 10 10 7784
Entity #31 | Chains: F
U5 small nuclear ribonucleoprotein 40 kDa protein protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 4697
95 % 11 16 5269
90 % 11 16 5340
70 % 11 16 5320
50 % 11 16 5172
40 % 11 16 5046
30 % 11 16 4966
Entity #32 | Chains: G,H,I,J
Pre-mRNA-processing factor 19 protein, length: 504 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 1426
95 % 7 10 1826
90 % 7 10 1869
70 % 7 10 1913
50 % 7 10 1962
40 % 7 10 1998
30 % 7 11 1842
Entity #33 | Chains: K
Pre-mRNA-splicing factor SPF27 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8295
95 % 7 10 9000
90 % 7 10 9031
70 % 7 10 9616
50 % 7 10 8926
40 % 7 10 8543
30 % 7 10 7988
Entity #34 | Chains: M
Pre-mRNA-splicing factor SYF1 protein, length: 855 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8625
95 % 7 10 9059
90 % 7 10 9587
70 % 7 10 9279
50 % 7 10 8625
40 % 7 10 8276
30 % 7 10 7761
Entity #35 | Chains: T
Pre-mRNA-splicing factor CWC22 homolog protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 9581
95 % 6 9 10243
90 % 6 9 10043
70 % 6 9 9707
50 % 6 9 9017
40 % 6 9 8623
30 % 6 9 8052
Entity #36 | Chains: U
Intron-binding protein aquarius protein, length: 1485 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 8107
95 % 8 11 8645
90 % 8 11 8602
70 % 8 11 8350
50 % 8 11 7859
40 % 8 11 7552
30 % 8 11 7094
Entity #37 | Chains: W
U2 small nuclear ribonucleoprotein A' protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 52413
95 % 12 16 5753
90 % 12 16 5811
70 % 12 16 5602
50 % 12 16 5410
40 % 12 16 5273
30 % 12 16 5099
Entity #38 | Chains: X
U2 small nuclear ribonucleoprotein B'' protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 16 4769
95 % 12 16 5411
90 % 12 16 5481
70 % 12 16 5469
50 % 12 16 5299
40 % 12 16 5164
30 % 12 16 5009
Entity #39 | Chains: a,h
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 30 547
95 % 26 32 704
90 % 26 32 735
70 % 26 32 764
50 % 37 60 482
40 % 37 60 506
30 % 37 60 532
Entity #4 | Chains: 5
U5 snRNA rna, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: b,i
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 30 584
95 % 24 30 764
90 % 24 30 796
70 % 24 30 830
50 % 24 30 859
40 % 24 30 881
30 % 24 30 921
Entity #41 | Chains: c,j
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 31 552
95 % 25 31 729
90 % 25 31 757
70 % 25 31 785
50 % 25 31 818
40 % 25 31 838
30 % 25 31 885
Entity #42 | Chains: d,k
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 31 543
95 % 25 31 718
90 % 25 31 745
70 % 25 31 776
50 % 36 59 491
40 % 36 60 510
30 % 36 60 530
Entity #43 | Chains: e,l
Small nuclear ribonucleoprotein Sm D3 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 21 949
95 % 16 22 1150
90 % 16 22 1189
70 % 16 22 1230
50 % 16 22 1281
40 % 16 22 1311
30 % 16 22 1356
Entity #44 | Chains: f,m
Small nuclear ribonucleoprotein-associated proteins B and B' protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 1385
95 % 14 19 1798
90 % 14 19 1839
70 % 14 19 1879
50 % 14 19 1923
40 % 14 19 1963
30 % 14 19 1996
Entity #45 | Chains: g,n
Small nuclear ribonucleoprotein Sm D1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 25 625
95 % 19 25 842
90 % 19 25 874
70 % 19 26 868
50 % 19 26 894
40 % 19 26 911
30 % 19 26 960
Entity #46 | Chains: o
Peptidyl-prolyl cis-trans isomerase E protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 11558
95 % 6 8 12695
90 % 6 8 12546
70 % 6 8 11887
50 % 6 8 10895
40 % 6 8 10235
30 % 6 8 9488
Entity #47 | Chains: p
Splicing factor 3A subunit 1 protein, length: 793 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 10531
95 % 8 8 11100
90 % 8 8 11006
70 % 8 8 10563
50 % 8 8 9804
40 % 8 8 9338
30 % 8 8 8696
Entity #48 | Chains: q
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 protein, length: 1041 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 24216
95 % 4 4 23503
90 % 4 4 22858
70 % 4 4 20950
50 % 4 4 18546
40 % 4 4 17046
30 % 4 4 15388
Entity #49 | Chains: r
U5 small nuclear ribonucleoprotein 200 kDa helicase protein, length: 2136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 6103
95 % 9 13 6830
90 % 9 13 6819
70 % 9 13 6742
50 % 9 13 6440
40 % 13 25 3170
30 % 13 25 3146
Entity #5 | Chains: 6
U6 snRNA rna, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #50 | Chains: w
Pre-mRNA-splicing factor ISY1 homolog protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83472
95 % 1 1 56395
90 % 1 2 31182
70 % 1 2 31598
50 % 1 2 27578
40 % 1 2 25114
30 % 1 2 22331
Entity #6 | Chains: 7
Splicing factor 3A subunit 2 protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 9765
95 % 9 9 10586
90 % 9 9 10484
70 % 9 9 10102
50 % 9 9 9403
40 % 9 9 8969
30 % 9 9 8371
Entity #7 | Chains: 8
Splicing factor 3B subunit 2 protein, length: 895 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 7970
95 % 11 11 8821
90 % 11 11 8777
70 % 11 11 8513
50 % 11 11 8008
40 % 11 11 7689
30 % 11 11 7219
Entity #8 | Chains: A
Pre-mRNA-processing-splicing factor 8 protein, length: 2335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 18 3855
95 % 13 18 4627
90 % 13 18 4850
70 % 13 19 4475
50 % 19 41 1904
40 % 19 41 1948
30 % 19 41 1981
Entity #9 | Chains: B
116 kDa U5 small nuclear ribonucleoprotein component protein, length: 972 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 15 5218
95 % 13 18 4613
90 % 13 18 4869
70 % 13 18 4852
50 % 13 19 4368
40 % 13 19 4370
30 % 20 42 1873

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures