Sequence Similarity Clusters for the Entities in PDB 6FF7

Entity #1 | Chains: 1
RNA-binding motif protein, X-linked 2 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 17847
95 % 5 5 16679
90 % 5 5 16398
70 % 5 5 15359
50 % 5 5 13844
40 % 5 5 12904
30 % 5 5 11706
Entity #10 | Chains: C
SNW domain-containing protein 1 protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11527
95 % 8 11 7610
90 % 8 11 7408
70 % 8 11 7272
50 % 8 11 7016
40 % 8 12 6412
30 % 8 12 6012
Entity #11 | Chains: D
Pleiotropic regulator 1 protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 10 7245
95 % 8 11 7321
90 % 8 11 7313
70 % 8 11 7175
50 % 8 11 6780
40 % 8 11 6559
30 % 8 11 6131
Entity #12 | Chains: E
Pre-mRNA-processing factor 17 protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 7244
95 % 7 10 7865
90 % 7 10 7822
70 % 7 10 7671
50 % 7 10 7221
40 % 8 12 6025
30 % 8 12 5691
Entity #13 | Chains: L
Cell division cycle 5-like protein protein, length: 802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 6620
95 % 9 12 7227
90 % 9 12 7232
70 % 9 12 7090
50 % 9 12 6691
40 % 9 12 6478
30 % 9 12 6064
Entity #14 | Chains: O
Crooked neck-like protein 1 protein, length: 848 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 5747
95 % 9 12 6542
90 % 9 12 6561
70 % 9 12 6467
50 % 9 12 6181
40 % 9 12 6002
30 % 9 12 5673
Entity #15 | Chains: P
Pre-mRNA-splicing factor RBM22 protein, length: 420 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 7616
95 % 7 10 8222
90 % 7 10 8174
70 % 7 10 8024
50 % 7 10 7518
40 % 7 10 7240
30 % 7 10 6755
Entity #16 | Chains: Q
Protein BUD31 homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 6830
95 % 8 11 7454
90 % 8 11 7449
70 % 8 11 7309
50 % 12 29 2459
40 % 12 29 2496
30 % 12 29 2456
Entity #17 | Chains: R
Spliceosome-associated protein CWC15 homolog protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 5332
95 % 9 12 6864
90 % 9 12 6877
70 % 9 12 6140
50 % 9 12 6433
40 % 9 12 6235
30 % 9 12 5875
Entity #18 | Chains: S
Serine/arginine repetitive matrix protein 2 protein, length: 2752 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9928
95 % 5 8 10248
90 % 5 8 10174
70 % 5 8 9825
50 % 5 8 9106
40 % 5 8 8695
30 % 5 8 8060
Entity #19 | Chains: V
Peptidyl-prolyl cis-trans isomerase-like 1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 5254
95 % 9 13 6087
90 % 9 13 6136
70 % 9 13 6063
50 % 9 13 5839
40 % 9 13 5681
30 % 9 13 5408
Entity #2 | Chains: 2
U2 snRNA rna, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Y
Serine/arginine repetitive matrix protein 1 protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 45444
95 % 2 2 35326
90 % 2 2 33822
70 % 2 2 30219
50 % 2 2 26379
40 % 2 2 24058
30 % 2 2 21351
Entity #21 | Chains: Z
pre-mRNA rna, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: s
Peptidyl-prolyl cis-trans isomerase CWC27 homolog protein, length: 472 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 23531
95 % 4 4 20826
90 % 4 4 20324
70 % 4 4 18763
50 % 4 4 16634
40 % 4 4 15388
30 % 4 4 13847
Entity #23 | Chains: t
RING finger protein 113A protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 23532
95 % 4 4 20827
90 % 4 4 20326
70 % 4 4 18764
50 % 4 4 16635
40 % 4 4 15389
30 % 4 4 13848
Entity #24 | Chains: u
Splicing factor 3B subunit 1 protein, length: 1304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 6658
95 % 10 11 7278
90 % 10 11 7271
70 % 10 11 7129
50 % 10 11 6735
40 % 10 11 6514
30 % 10 11 6096
Entity #25 | Chains: v
Splicing factor 3B subunit 3 protein, length: 1217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 6901
95 % 11 12 6911
90 % 11 12 7145
70 % 11 12 6513
50 % 12 13 5320
40 % 12 13 5190
30 % 12 13 4962
Entity #26 | Chains: x
Splicing factor 3B subunit 5 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 6161
95 % 11 12 6816
90 % 11 12 6817
70 % 11 12 6712
50 % 11 12 6390
40 % 11 12 6195
30 % 11 12 5841
Entity #27 | Chains: y
PHD finger-like domain-containing protein 5A protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 6800
95 % 11 12 5963
90 % 11 12 6124
70 % 11 12 6052
50 % 11 12 5824
40 % 11 12 5661
30 % 11 12 5392
Entity #28 | Chains: N,z
Splicing factor 3B subunit 6 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 7512
95 % 10 10 5771
90 % 10 10 5818
70 % 10 10 5757
50 % 10 10 5538
40 % 10 10 5396
30 % 10 10 5137
Entity #29 | Chains: 0
Smad nuclear-interacting protein 1 protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 20109
95 % 4 4 20828
90 % 4 4 20327
70 % 4 4 18765
50 % 4 4 16636
40 % 4 4 15390
30 % 4 4 13849
Entity #3 | Chains: 3
BUD13 homolog protein, length: 619 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 16931
95 % 5 5 16765
90 % 5 5 16475
70 % 5 5 15449
50 % 5 5 13922
40 % 5 5 12976
30 % 5 5 11767
Entity #30 | Chains: 9
Splicing factor 3A subunit 3 protein, length: 501 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 12645
95 % 7 7 12555
90 % 7 7 12055
70 % 7 7 11488
50 % 7 7 10512
40 % 7 7 10202
30 % 7 7 8948
Entity #31 | Chains: F
U5 small nuclear ribonucleoprotein 40 kDa protein protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 3765
95 % 11 16 4571
90 % 11 16 4631
70 % 11 16 4588
50 % 11 16 4468
40 % 11 16 4370
30 % 11 16 4246
Entity #32 | Chains: G,H,I,J
Pre-mRNA-processing factor 19 protein, length: 504 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 1209
95 % 7 10 1614
90 % 7 10 1651
70 % 7 10 1683
50 % 7 10 1707
40 % 7 10 1759
30 % 7 11 1588
Entity #33 | Chains: K
Pre-mRNA-splicing factor SPF27 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 7148
95 % 7 10 7789
90 % 7 10 8382
70 % 7 10 7604
50 % 7 10 7162
40 % 7 10 6920
30 % 7 10 6470
Entity #34 | Chains: M
Pre-mRNA-splicing factor SYF1 protein, length: 855 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 7493
95 % 7 10 8090
90 % 7 10 8051
70 % 7 10 7895
50 % 7 10 7416
40 % 7 10 7151
30 % 7 10 6681
Entity #35 | Chains: T
Pre-mRNA-splicing factor CWC22 homolog protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 8210
95 % 6 9 8786
90 % 6 9 8745
70 % 6 9 8539
50 % 6 9 7953
40 % 6 9 7663
30 % 6 9 7146
Entity #36 | Chains: U
Intron-binding protein aquarius protein, length: 1485 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 6913
95 % 8 11 7548
90 % 8 11 7542
70 % 8 11 7394
50 % 8 11 6970
40 % 8 11 6749
30 % 8 11 6302
Entity #37 | Chains: W
U2 small nuclear ribonucleoprotein A' protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 44623
95 % 10 14 5382
90 % 10 14 5441
70 % 10 14 5576
50 % 10 14 5376
40 % 10 14 5233
30 % 10 14 5003
Entity #38 | Chains: X
U2 small nuclear ribonucleoprotein B'' protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 14 4981
95 % 10 14 5769
90 % 10 14 5816
70 % 10 14 5703
50 % 10 14 5492
40 % 10 14 5348
30 % 10 14 5102
Entity #39 | Chains: a,h
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 28 429
95 % 24 30 572
90 % 24 30 593
70 % 24 30 635
50 % 32 56 438
40 % 32 56 457
30 % 32 56 480
Entity #4 | Chains: 5
U5 snRNA rna, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: b,i
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 27 465
95 % 21 27 634
90 % 21 27 667
70 % 21 27 700
50 % 21 27 744
40 % 21 27 785
30 % 21 27 819
Entity #41 | Chains: c,j
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 28 436
95 % 22 28 598
90 % 22 28 626
70 % 22 28 662
50 % 22 28 703
40 % 22 28 739
30 % 22 28 781
Entity #42 | Chains: d,k
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 28 434
95 % 22 28 593
90 % 22 28 618
70 % 22 28 657
50 % 30 54 443
40 % 30 55 460
30 % 30 55 484
Entity #43 | Chains: e,l
Small nuclear ribonucleoprotein Sm D3 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 825
95 % 14 20 1012
90 % 14 20 1048
70 % 14 20 1088
50 % 14 20 1122
40 % 14 20 1156
30 % 14 20 1204
Entity #44 | Chains: f,m
Small nuclear ribonucleoprotein-associated proteins B and B' protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 1215
95 % 12 17 1642
90 % 12 17 1661
70 % 12 17 1704
50 % 12 17 1740
40 % 12 17 1776
30 % 12 17 1812
Entity #45 | Chains: g,n
Small nuclear ribonucleoprotein Sm D1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 23 498
95 % 17 23 686
90 % 17 23 714
70 % 17 24 720
50 % 17 24 769
40 % 17 24 810
30 % 17 24 840
Entity #46 | Chains: o
Peptidyl-prolyl cis-trans isomerase E protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 11636
95 % 6 8 11587
90 % 6 8 11458
70 % 6 8 10943
50 % 6 8 10018
40 % 6 8 9462
30 % 6 8 8741
Entity #47 | Chains: p
Splicing factor 3A subunit 1 protein, length: 793 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 14801
95 % 6 6 14278
90 % 6 6 14107
70 % 6 6 13347
50 % 6 6 12153
40 % 6 6 11356
30 % 6 6 10378
Entity #48 | Chains: q
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 protein, length: 1041 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 22939
95 % 4 4 22479
90 % 4 4 21863
70 % 4 4 20083
50 % 4 4 15657
40 % 4 4 13736
30 % 4 4 12452
Entity #49 | Chains: r
U5 small nuclear ribonucleoprotein 200 kDa helicase protein, length: 2136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 5050
95 % 9 13 5847
90 % 9 13 5887
70 % 9 13 5818
50 % 9 13 5601
40 % 13 25 2768
30 % 13 25 2728
Entity #5 | Chains: 6
U6 snRNA rna, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #50 | Chains: w
Pre-mRNA-splicing factor ISY1 homolog protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66133
95 % 1 1 51163
90 % 1 2 34297
70 % 1 2 25410
50 % 1 2 22327
40 % 1 2 22940
30 % 1 2 20424
Entity #6 | Chains: 7
Splicing factor 3A subunit 2 protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 12387
95 % 7 7 12303
90 % 7 7 12195
70 % 7 7 11601
50 % 7 7 10606
40 % 7 7 10006
30 % 7 7 9213
Entity #7 | Chains: 8
Splicing factor 3B subunit 2 protein, length: 895 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 10447
95 % 8 8 9943
90 % 8 8 10532
70 % 8 8 10167
50 % 8 8 9402
40 % 8 8 8926
30 % 8 8 8268
Entity #8 | Chains: A
Pre-mRNA-processing-splicing factor 8 protein, length: 2335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 18 3355
95 % 13 18 4213
90 % 13 18 4055
70 % 13 19 3916
50 % 19 41 1622
40 % 19 41 1670
30 % 19 41 1694
Entity #9 | Chains: B
116 kDa U5 small nuclear ribonucleoprotein component protein, length: 972 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 15 4309
95 % 13 18 4066
90 % 13 18 4142
70 % 13 18 4126
50 % 13 19 3830
40 % 13 19 3778
30 % 19 41 1696

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures