Sequence Similarity Clusters for the Entities in PDB 6FF7

Entity #1 | Chains: 1
RNA-binding motif protein, X-linked 2 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 19676
95 % 5 5 17833
90 % 5 5 17518
70 % 5 5 16321
50 % 5 5 14704
40 % 5 5 13674
30 % 5 5 12450
Entity #10 | Chains: C
SNW domain-containing protein 1 protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11265
95 % 8 11 7785
90 % 8 11 7737
70 % 8 11 7550
50 % 8 11 7105
40 % 8 12 6193
30 % 8 12 6201
Entity #11 | Chains: D
Pleiotropic regulator 1 protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 10 8196
95 % 8 11 7772
90 % 8 11 7736
70 % 8 11 7549
50 % 8 11 7104
40 % 8 11 6860
30 % 8 11 6432
Entity #12 | Chains: E
Pre-mRNA-processing factor 17 protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8304
95 % 7 10 9100
90 % 7 10 8542
70 % 7 10 8309
50 % 7 10 8165
40 % 8 12 6314
30 % 8 12 5970
Entity #13 | Chains: L
Cell division cycle 5-like protein protein, length: 802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 6390
95 % 9 12 7571
90 % 9 12 7546
70 % 9 12 7387
50 % 9 12 6954
40 % 9 12 6724
30 % 9 12 6318
Entity #14 | Chains: O
Crooked neck-like protein 1 protein, length: 848 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 5952
95 % 9 12 6915
90 % 9 12 6906
70 % 9 12 6811
50 % 9 12 6471
40 % 9 12 6276
30 % 9 12 5937
Entity #15 | Chains: P
Pre-mRNA-splicing factor RBM22 protein, length: 420 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 7559
95 % 7 10 8514
90 % 7 10 8455
70 % 7 10 8220
50 % 7 10 7709
40 % 7 10 7436
30 % 7 10 6965
Entity #16 | Chains: Q
Protein BUD31 homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 7349
95 % 8 11 7857
90 % 8 11 7819
70 % 8 11 7624
50 % 12 29 2574
40 % 12 29 2606
30 % 12 29 2581
Entity #17 | Chains: R
Spliceosome-associated protein CWC15 homolog protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 6662
95 % 9 12 6702
90 % 9 12 6711
70 % 9 12 6605
50 % 9 12 6482
40 % 9 12 6136
30 % 9 12 5952
Entity #18 | Chains: S
Serine/arginine repetitive matrix protein 2 protein, length: 2752 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 9996
95 % 5 8 10778
90 % 5 8 10664
70 % 5 8 10232
50 % 5 8 9524
40 % 5 8 9081
30 % 5 8 8440
Entity #19 | Chains: V
Peptidyl-prolyl cis-trans isomerase-like 1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 5678
95 % 9 13 6478
90 % 9 13 6494
70 % 9 13 6400
50 % 9 13 6110
40 % 9 13 5950
30 % 9 13 5679
Entity #2 | Chains: 2
U2 snRNA rna, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Y
Serine/arginine repetitive matrix protein 1 protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 50964
95 % 2 2 34111
90 % 2 2 32666
70 % 2 2 29241
50 % 2 2 25625
40 % 2 2 23385
30 % 2 2 20839
Entity #21 | Chains: Z
pre-mRNA rna, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: s
Peptidyl-prolyl cis-trans isomerase CWC27 homolog protein, length: 472 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 22232
95 % 4 4 20628
90 % 4 4 20155
70 % 4 4 18616
50 % 4 4 16590
40 % 4 4 15345
30 % 4 4 13916
Entity #23 | Chains: t
RING finger protein 113A protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 26612
95 % 4 4 23375
90 % 4 4 22705
70 % 4 4 18617
50 % 4 4 16591
40 % 4 4 15346
30 % 4 4 13917
Entity #24 | Chains: u
Splicing factor 3B subunit 1 protein, length: 1304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 7425
95 % 10 11 7815
90 % 10 11 7970
70 % 10 11 7609
50 % 10 11 7302
40 % 10 11 7049
30 % 10 11 6613
Entity #25 | Chains: v
Splicing factor 3B subunit 3 protein, length: 1217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 7213
95 % 11 12 7585
90 % 11 12 7120
70 % 11 12 6878
50 % 12 13 5604
40 % 12 13 5448
30 % 12 13 5205
Entity #26 | Chains: x
Splicing factor 3B subunit 5 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 5778
95 % 11 12 6654
90 % 11 12 7105
70 % 11 12 6561
50 % 11 12 6262
40 % 11 12 6424
30 % 11 12 5801
Entity #27 | Chains: y
PHD finger-like domain-containing protein 5A protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 7178
95 % 11 12 6352
90 % 11 12 6365
70 % 11 12 6268
50 % 11 12 6099
40 % 11 12 5935
30 % 11 12 5660
Entity #28 | Chains: N,z
Splicing factor 3B subunit 6 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 8422
95 % 10 10 5994
90 % 10 10 6019
70 % 10 10 5942
50 % 10 10 5687
40 % 10 10 5539
30 % 10 10 5284
Entity #29 | Chains: 0
Smad nuclear-interacting protein 1 protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 27576
95 % 4 4 24955
90 % 4 4 24172
70 % 4 4 19744
50 % 4 4 19485
40 % 4 4 14677
30 % 4 4 14597
Entity #3 | Chains: 3
BUD13 homolog protein, length: 619 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 20075
95 % 5 5 18566
90 % 5 5 18187
70 % 5 5 16912
50 % 5 5 15218
40 % 5 5 14161
30 % 5 5 12884
Entity #30 | Chains: 9
Splicing factor 3A subunit 3 protein, length: 501 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 12781
95 % 7 7 12437
90 % 7 7 12263
70 % 7 7 11654
50 % 7 7 10641
40 % 7 7 10032
30 % 7 7 9275
Entity #31 | Chains: F
U5 small nuclear ribonucleoprotein 40 kDa protein protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 4255
95 % 11 16 5084
90 % 11 16 5150
70 % 11 16 5317
50 % 11 16 4798
40 % 11 16 5000
30 % 11 16 4792
Entity #32 | Chains: G,H,I,J
Pre-mRNA-processing factor 19 protein, length: 504 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 1252
95 % 7 10 1693
90 % 7 10 1677
70 % 7 10 1758
50 % 7 10 1797
40 % 7 10 1847
30 % 7 11 1674
Entity #33 | Chains: K
Pre-mRNA-splicing factor SPF27 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8373
95 % 7 10 8755
90 % 7 10 8691
70 % 7 10 8458
50 % 7 10 7890
40 % 7 10 7613
30 % 7 10 7114
Entity #34 | Chains: M
Pre-mRNA-splicing factor SYF1 protein, length: 855 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8303
95 % 7 10 8598
90 % 7 10 8541
70 % 7 10 8308
50 % 7 10 7780
40 % 7 10 7502
30 % 7 10 7024
Entity #35 | Chains: T
Pre-mRNA-splicing factor CWC22 homolog protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 9003
95 % 6 9 9882
90 % 6 9 9800
70 % 6 9 9506
50 % 6 9 8851
40 % 6 9 8476
30 % 6 9 7902
Entity #36 | Chains: U
Intron-binding protein aquarius protein, length: 1485 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 7121
95 % 8 11 7834
90 % 8 11 7792
70 % 8 11 7598
50 % 8 11 7144
40 % 8 11 6906
30 % 8 11 6476
Entity #37 | Chains: W
U2 small nuclear ribonucleoprotein A' protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 49108
95 % 10 14 6037
90 % 10 14 6191
70 % 10 14 5906
50 % 10 14 5661
40 % 10 14 5506
30 % 10 14 5258
Entity #38 | Chains: X
U2 small nuclear ribonucleoprotein B'' protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 14 5005
95 % 10 14 5888
90 % 10 14 5936
70 % 10 14 5933
50 % 10 14 5612
40 % 10 14 5529
30 % 10 14 5211
Entity #39 | Chains: a,h
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 28 479
95 % 24 30 637
90 % 24 30 664
70 % 24 30 692
50 % 35 58 445
40 % 35 58 466
30 % 35 58 486
Entity #4 | Chains: 5
U5 snRNA rna, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: b,i
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 27 501
95 % 21 27 685
90 % 21 27 715
70 % 21 27 751
50 % 21 27 793
40 % 21 27 829
30 % 21 27 869
Entity #41 | Chains: c,j
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 28 483
95 % 22 28 661
90 % 22 28 692
70 % 22 28 719
50 % 22 28 754
40 % 22 28 787
30 % 22 28 833
Entity #42 | Chains: d,k
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 28 477
95 % 22 28 649
90 % 22 28 680
70 % 22 28 709
50 % 33 56 455
40 % 33 57 474
30 % 33 57 494
Entity #43 | Chains: e,l
Small nuclear ribonucleoprotein Sm D3 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 867
95 % 14 20 1107
90 % 14 20 1136
70 % 14 20 1161
50 % 14 20 1194
40 % 14 20 1234
30 % 14 20 1270
Entity #44 | Chains: f,m
Small nuclear ribonucleoprotein-associated proteins B and B' protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 1315
95 % 12 17 1728
90 % 12 17 1767
70 % 12 17 1809
50 % 12 17 1847
40 % 12 17 1876
30 % 12 17 1917
Entity #45 | Chains: g,n
Small nuclear ribonucleoprotein Sm D1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 23 551
95 % 17 23 745
90 % 17 23 776
70 % 17 24 776
50 % 17 24 821
40 % 17 24 859
30 % 17 24 894
Entity #46 | Chains: o
Peptidyl-prolyl cis-trans isomerase E protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 10715
95 % 6 8 11896
90 % 6 8 11749
70 % 6 8 11199
50 % 6 8 10274
40 % 6 8 9696
30 % 6 8 8991
Entity #47 | Chains: p
Splicing factor 3A subunit 1 protein, length: 793 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 13685
95 % 6 6 13638
90 % 6 6 13445
70 % 6 6 12984
50 % 6 6 11652
40 % 6 6 10946
30 % 6 6 10081
Entity #48 | Chains: q
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 protein, length: 1041 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 22448
95 % 4 4 23928
90 % 4 4 21303
70 % 4 4 19616
50 % 4 4 17421
40 % 4 4 16045
30 % 4 4 14517
Entity #49 | Chains: r
U5 small nuclear ribonucleoprotein 200 kDa helicase protein, length: 2136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 5578
95 % 9 13 6282
90 % 9 13 6302
70 % 9 13 6209
50 % 9 13 5930
40 % 13 25 2915
30 % 13 25 2873
Entity #5 | Chains: 6
U6 snRNA rna, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #50 | Chains: w
Pre-mRNA-splicing factor ISY1 homolog protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78578
95 % 1 1 44195
90 % 1 2 29280
70 % 1 2 29838
50 % 1 2 23214
40 % 1 2 23862
30 % 1 2 21228
Entity #6 | Chains: 7
Splicing factor 3A subunit 2 protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 13495
95 % 7 7 12290
90 % 7 7 12677
70 % 7 7 12473
50 % 7 7 10529
40 % 7 7 9920
30 % 7 7 9546
Entity #7 | Chains: 8
Splicing factor 3B subunit 2 protein, length: 895 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 11647
95 % 8 8 10006
90 % 8 8 11274
70 % 8 8 10580
50 % 8 8 9792
40 % 8 8 9442
30 % 8 8 8640
Entity #8 | Chains: A
Pre-mRNA-processing-splicing factor 8 protein, length: 2335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 18 3778
95 % 13 18 4400
90 % 13 18 4559
70 % 13 19 4221
50 % 19 41 1745
40 % 19 41 1795
30 % 19 41 1818
Entity #9 | Chains: B
116 kDa U5 small nuclear ribonucleoprotein component protein, length: 972 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 15 4735
95 % 13 18 4338
90 % 13 18 4414
70 % 13 18 4400
50 % 13 19 4052
40 % 13 19 3999
30 % 19 41 1791

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures