Sequence Similarity Clusters for the Entities in PDB 6FF7

Entity #1 | Chains: 1
RNA-binding motif protein, X-linked 2 protein, length: 322 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 18920
95 % 5 5 17573
90 % 5 5 17234
70 % 5 5 16109
50 % 5 5 14545
40 % 5 5 13529
30 % 5 5 12320
Entity #10 | Chains: C
SNW domain-containing protein 1 protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 12188
95 % 8 11 7994
90 % 8 11 7957
70 % 8 11 7746
50 % 8 11 7304
40 % 8 12 6706
30 % 8 12 6288
Entity #11 | Chains: D
Pleiotropic regulator 1 protein, length: 514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 10 7586
95 % 8 11 7876
90 % 8 11 7612
70 % 8 11 7445
50 % 8 11 7011
40 % 8 11 6774
30 % 8 11 6359
Entity #12 | Chains: E
Pre-mRNA-processing factor 17 protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8459
95 % 7 10 8902
90 % 7 10 8844
70 % 7 10 8603
50 % 7 10 8039
40 % 8 12 6249
30 % 8 12 5917
Entity #13 | Chains: L
Cell division cycle 5-like protein protein, length: 802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 6343
95 % 9 12 6640
90 % 9 12 6664
70 % 9 12 6697
50 % 9 12 6597
40 % 9 12 6401
30 % 9 12 6041
Entity #14 | Chains: O
Crooked neck-like protein 1 protein, length: 848 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 6326
95 % 9 12 7025
90 % 9 12 7038
70 % 9 12 6903
50 % 9 12 6582
40 % 9 12 6388
30 % 9 12 6031
Entity #15 | Chains: P
Pre-mRNA-splicing factor RBM22 protein, length: 420 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 7366
95 % 7 10 8010
90 % 7 10 7965
70 % 7 10 7760
50 % 7 10 7319
40 % 7 10 7075
30 % 7 10 6631
Entity #16 | Chains: Q
Protein BUD31 homolog protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 7084
95 % 8 11 7697
90 % 8 11 7683
70 % 8 11 7497
50 % 12 29 2541
40 % 12 29 2573
30 % 12 29 2552
Entity #17 | Chains: R
Spliceosome-associated protein CWC15 homolog protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 6195
95 % 9 12 6913
90 % 9 12 6934
70 % 9 12 6796
50 % 9 12 6500
40 % 9 12 6312
30 % 9 12 5969
Entity #18 | Chains: S
Serine/arginine repetitive matrix protein 2 protein, length: 2752 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 8 11799
95 % 5 8 11806
90 % 5 8 11662
70 % 5 8 11107
50 % 5 8 10185
40 % 5 8 9621
30 % 5 8 8907
Entity #19 | Chains: V
Peptidyl-prolyl cis-trans isomerase-like 1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 5528
95 % 9 13 6354
90 % 9 13 6395
70 % 9 13 6305
50 % 9 13 6054
40 % 9 13 5884
30 % 9 13 5610
Entity #2 | Chains: 2
U2 snRNA rna, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Y
Serine/arginine repetitive matrix protein 1 protein, length: 904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 50898
95 % 2 2 33615
90 % 2 2 32213
70 % 2 2 28860
50 % 2 2 25271
40 % 2 2 23044
30 % 2 2 20517
Entity #21 | Chains: Z
pre-mRNA rna, length: 369 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #22 | Chains: s
Peptidyl-prolyl cis-trans isomerase CWC27 homolog protein, length: 472 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 28070
95 % 4 4 24075
90 % 4 4 23321
70 % 4 4 21355
50 % 4 4 18897
40 % 4 4 17329
30 % 4 4 15568
Entity #23 | Chains: t
RING finger protein 113A protein, length: 343 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 22516
95 % 4 4 20900
90 % 4 4 22217
70 % 4 4 20411
50 % 4 4 18094
40 % 4 4 16636
30 % 4 4 14984
Entity #24 | Chains: u
Splicing factor 3B subunit 1 protein, length: 1304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 6963
95 % 10 11 7581
90 % 10 11 7570
70 % 10 11 7399
50 % 10 11 6974
40 % 10 11 6737
30 % 10 11 6320
Entity #25 | Chains: v
Splicing factor 3B subunit 3 protein, length: 1217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 7251
95 % 11 12 7019
90 % 11 12 6802
70 % 11 12 7008
50 % 12 13 5510
40 % 12 13 5374
30 % 12 13 5128
Entity #26 | Chains: x
Splicing factor 3B subunit 5 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 12 6264
95 % 11 12 6427
90 % 11 12 6464
70 % 11 12 6855
50 % 11 12 6543
40 % 11 12 5955
30 % 11 12 5671
Entity #27 | Chains: y
PHD finger-like domain-containing protein 5A protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 11 7191
95 % 11 12 6342
90 % 11 12 6379
70 % 11 12 6294
50 % 11 12 6038
40 % 11 12 5870
30 % 11 12 5594
Entity #28 | Chains: N,z
Splicing factor 3B subunit 6 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 8083
95 % 10 10 5906
90 % 10 10 5935
70 % 10 10 5851
50 % 10 10 5628
40 % 10 10 5486
30 % 10 10 5229
Entity #29 | Chains: 0
Smad nuclear-interacting protein 1 protein, length: 396 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 29420
95 % 4 4 24074
90 % 4 4 23320
70 % 4 4 21354
50 % 4 4 18896
40 % 4 4 17328
30 % 4 4 15567
Entity #3 | Chains: 3
BUD13 homolog protein, length: 619 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 19710
95 % 5 5 18299
90 % 5 5 17850
70 % 5 5 16694
50 % 5 5 14973
40 % 5 5 14005
30 % 5 5 12744
Entity #30 | Chains: 9
Splicing factor 3A subunit 3 protein, length: 501 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 12765
95 % 7 7 12659
90 % 7 7 11975
70 % 7 7 11833
50 % 7 7 10413
40 % 7 7 9812
30 % 7 7 9410
Entity #31 | Chains: F
U5 small nuclear ribonucleoprotein 40 kDa protein protein, length: 357 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 16 4007
95 % 11 16 4834
90 % 11 16 4920
70 % 11 16 4867
50 % 11 16 4720
40 % 11 16 4610
30 % 11 16 4480
Entity #32 | Chains: G,H,I,J
Pre-mRNA-processing factor 19 protein, length: 504 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 1255
95 % 7 10 1678
90 % 7 10 1700
70 % 7 10 1749
50 % 7 10 1789
40 % 7 10 1836
30 % 7 11 1657
Entity #33 | Chains: K
Pre-mRNA-splicing factor SPF27 protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 8220
95 % 7 10 8133
90 % 7 10 8079
70 % 7 10 7874
50 % 7 10 7417
40 % 7 10 7175
30 % 7 10 6716
Entity #34 | Chains: M
Pre-mRNA-splicing factor SYF1 protein, length: 855 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 7610
95 % 7 10 8245
90 % 7 10 8176
70 % 7 10 7973
50 % 7 10 7492
40 % 7 10 7252
30 % 7 10 6789
Entity #35 | Chains: T
Pre-mRNA-splicing factor CWC22 homolog protein, length: 908 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 9 8871
95 % 6 9 9339
90 % 6 9 9271
70 % 6 9 8991
50 % 6 9 8390
40 % 6 9 8042
30 % 6 9 7511
Entity #36 | Chains: U
Intron-binding protein aquarius protein, length: 1485 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 7261
95 % 8 11 7889
90 % 8 11 7856
70 % 8 11 7657
50 % 8 11 7214
40 % 8 11 6975
30 % 8 11 6547
Entity #37 | Chains: W
U2 small nuclear ribonucleoprotein A' protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 46010
95 % 10 14 5629
90 % 10 14 5683
70 % 10 14 5806
50 % 10 14 5588
40 % 10 14 5445
30 % 10 14 5190
Entity #38 | Chains: X
U2 small nuclear ribonucleoprotein B'' protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 14 4804
95 % 10 14 5934
90 % 10 14 5969
70 % 10 14 5611
50 % 10 14 5650
40 % 10 14 5273
30 % 10 14 5033
Entity #39 | Chains: a,h
Small nuclear ribonucleoprotein Sm D2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 28 467
95 % 24 30 614
90 % 24 30 639
70 % 24 30 678
50 % 35 58 440
40 % 35 58 460
30 % 35 58 479
Entity #4 | Chains: 5
U5 snRNA rna, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: b,i
Small nuclear ribonucleoprotein F protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 27 491
95 % 21 27 666
90 % 21 27 700
70 % 21 27 737
50 % 21 27 775
40 % 21 27 812
30 % 21 27 846
Entity #41 | Chains: c,j
Small nuclear ribonucleoprotein E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 28 470
95 % 22 28 638
90 % 22 28 670
70 % 22 28 703
50 % 22 28 735
40 % 22 28 768
30 % 22 28 808
Entity #42 | Chains: d,k
Small nuclear ribonucleoprotein G protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 28 465
95 % 22 28 630
90 % 22 28 662
70 % 22 28 694
50 % 33 56 448
40 % 33 57 462
30 % 33 57 482
Entity #43 | Chains: e,l
Small nuclear ribonucleoprotein Sm D3 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 19 855
95 % 14 20 1071
90 % 14 20 1101
70 % 14 20 1136
50 % 14 20 1163
40 % 14 20 1203
30 % 14 20 1244
Entity #44 | Chains: f,m
Small nuclear ribonucleoprotein-associated proteins B and B' protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 17 1262
95 % 12 17 1703
90 % 12 17 1733
70 % 12 17 1764
50 % 12 17 1826
40 % 12 17 1872
30 % 12 17 1869
Entity #45 | Chains: g,n
Small nuclear ribonucleoprotein Sm D1 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 23 535
95 % 17 23 731
90 % 17 23 761
70 % 17 24 764
50 % 17 24 806
40 % 17 24 847
30 % 17 24 877
Entity #46 | Chains: o
Peptidyl-prolyl cis-trans isomerase E protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 8 10704
95 % 6 8 10966
90 % 6 8 10717
70 % 6 8 10289
50 % 6 8 9614
40 % 6 8 9052
30 % 6 8 8424
Entity #47 | Chains: p
Splicing factor 3A subunit 1 protein, length: 793 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 6 16254
95 % 6 6 15544
90 % 6 6 15276
70 % 6 6 14347
50 % 6 6 12981
40 % 6 6 12125
30 % 6 6 11078
Entity #48 | Chains: q
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 protein, length: 1041 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 24340
95 % 4 4 21518
90 % 4 4 22764
70 % 4 4 19282
50 % 4 4 17147
40 % 4 4 15838
30 % 4 4 14308
Entity #49 | Chains: r
U5 small nuclear ribonucleoprotein 200 kDa helicase protein, length: 2136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 13 5365
95 % 9 13 6308
90 % 9 13 6226
70 % 9 13 6142
50 % 9 13 5890
40 % 13 25 2884
30 % 13 25 2859
Entity #5 | Chains: 6
U6 snRNA rna, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #50 | Chains: w
Pre-mRNA-splicing factor ISY1 homolog protein, length: 285 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73347
95 % 1 1 49269
90 % 1 2 28833
70 % 1 2 29431
50 % 1 2 22896
40 % 1 2 23499
30 % 1 2 20889
Entity #6 | Chains: 7
Splicing factor 3A subunit 2 protein, length: 464 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 12885
95 % 7 7 12757
90 % 7 7 12616
70 % 7 7 11955
50 % 7 7 10928
40 % 7 7 10284
30 % 7 7 9484
Entity #7 | Chains: 8
Splicing factor 3B subunit 2 protein, length: 895 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 10833
95 % 8 8 9981
90 % 8 8 10952
70 % 8 8 10507
50 % 8 8 9691
40 % 8 8 9197
30 % 8 8 8551
Entity #8 | Chains: A
Pre-mRNA-processing-splicing factor 8 protein, length: 2335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 18 3635
95 % 13 18 4384
90 % 13 18 4465
70 % 13 19 4153
50 % 19 41 1712
40 % 19 41 1758
30 % 19 41 1787
Entity #9 | Chains: B
116 kDa U5 small nuclear ribonucleoprotein component protein, length: 972 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 15 4572
95 % 13 18 4323
90 % 13 18 4409
70 % 13 18 4419
50 % 13 19 4030
40 % 13 19 3993
30 % 19 41 1771

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures