6GZ5

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)


Sequence Similarity Clusters for the Entities in PDB 6GZ5

Entity #1 | Chains: A2
28S ribosomal RNA rna, length: 3612 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: BP
ribosomal protein uS19 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 6822
95 % 15 20 3668
90 % 15 20 3818
70 % 15 20 3717
50 % 68 145 318
40 % 68 145 332
30 % 68 145 347
Entity #11 | Chains: BQ
ribosomal protein uS9 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 65 580
95 % 26 65 796
90 % 26 65 842
70 % 26 68 822
50 % 69 158 258
40 % 69 162 259
30 % 69 162 275
Entity #12 | Chains: BR
ribosomal protein eS17 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 40 1183
95 % 26 66 781
90 % 26 66 816
70 % 26 67 843
50 % 68 142 320
40 % 68 142 334
30 % 68 142 348
Entity #13 | Chains: BS
ribosomal protein uS13 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 67 568
95 % 26 67 768
90 % 26 67 808
70 % 66 141 273
50 % 69 152 277
40 % 69 157 276
30 % 69 157 292
Entity #14 | Chains: BT
ribosomal protein eS19 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 40 1028
95 % 26 66 787
90 % 26 66 825
70 % 26 66 865
50 % 66 139 328
40 % 66 139 346
30 % 68 142 345
Entity #15 | Chains: BU
ribosomal protein uS10 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 20 2951
95 % 15 22 3259
90 % 15 22 3331
70 % 15 22 3344
50 % 15 25 2860
40 % 15 29 2490
30 % 378 550 32
Entity #16 | Chains: BZ
ribosomal protein eS25 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 17782
95 % 5 5 17302
90 % 5 5 17005
70 % 5 5 15901
50 % 5 5 13776
40 % 5 5 12873
30 % 5 5 12099
Entity #17 | Chains: Bc
ribosomal protein eS28 protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 6723
95 % 9 11 7389
90 % 9 14 5567
70 % 67 151 259
50 % 69 158 261
40 % 69 158 274
30 % 69 158 290
Entity #18 | Chains: Bd
ribosomal protein uS14 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 60 654
95 % 26 64 821
90 % 26 64 861
70 % 66 134 294
50 % 69 145 308
40 % 69 145 319
30 % 69 145 334
Entity #19 | Chains: Bf
ribosomal protein eS31 protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 21 2746
95 % 15 25 2782
90 % 15 25 2843
70 % 53 67 604
50 % 53 69 623
40 % 53 69 655
30 % 53 69 691
Entity #2 | Chains: Bv
P/P-site-tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Bg
ribosomal protein RACK 1 protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 66 544
95 % 27 66 742
90 % 27 66 777
70 % 28 68 790
50 % 73 144 300
40 % 75 150 277
30 % 75 151 291
Entity #21 | Chains: BA
ribosomal protein uS2 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 18 3330
95 % 15 23 3140
90 % 15 23 3226
70 % 15 23 3220
50 % 28 49 1071
40 % 58 111 419
30 % 58 111 435
Entity #22 | Chains: BB
ribosomal protein eS1 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 18 3286
95 % 15 22 3210
90 % 15 22 3284
70 % 15 22 3298
50 % 28 46 1130
40 % 28 46 1159
30 % 28 50 1129
Entity #23 | Chains: BC
ribosomal protein uS5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 15 4448
95 % 15 25 2707
90 % 15 25 2779
70 % 15 28 2467
50 % 28 49 1064
40 % 28 49 1101
30 % 28 49 1142
Entity #24 | Chains: BE
ribosomal protein eS4 protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 12 6315
95 % 5 12 6748
90 % 26 66 827
70 % 65 143 269
50 % 68 157 267
40 % 68 157 282
30 % 68 161 282
Entity #25 | Chains: BG
ribosomal protein eS6 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 65 592
95 % 26 66 790
90 % 26 66 826
70 % 26 68 834
50 % 66 144 324
40 % 66 149 328
30 % 66 149 342
Entity #26 | Chains: BH
ribosomal protein eS7 protein, length: 183 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 65 584
95 % 26 66 779
90 % 26 66 820
70 % 26 67 847
50 % 66 148 315
40 % 66 148 329
30 % 68 151 316
Entity #27 | Chains: BI
ribosomal protein eS8 protein, length: 207 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 61 633
95 % 26 66 773
90 % 26 66 811
70 % 26 66 861
50 % 68 151 284
40 % 68 152 297
30 % 68 152 312
Entity #28 | Chains: BJ
ribosomal protein uS4 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 66 575
95 % 26 66 793
90 % 26 66 829
70 % 66 145 265
50 % 69 160 254
40 % 69 164 255
30 % 69 164 272
Entity #29 | Chains: BL
ribosomal protein uS17 protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 67 570
95 % 26 67 770
90 % 26 67 809
70 % 26 68 824
50 % 69 159 255
40 % 69 159 269
30 % 69 159 285
Entity #3 | Chains: Bx
mRNA rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #30 | Chains: BN
ribosomal protein uS15 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 66 573
95 % 26 66 785
90 % 26 66 823
70 % 67 150 260
50 % 69 157 262
40 % 69 161 263
30 % 69 161 279
Entity #31 | Chains: BO
ribosomal protein uS11 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 55 724
95 % 22 55 975
90 % 22 57 986
70 % 62 137 282
50 % 69 159 256
40 % 69 159 270
30 % 69 159 286
Entity #32 | Chains: BV
ribosomal protein eS21 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 57 689
95 % 26 65 802
90 % 26 65 836
70 % 26 66 864
50 % 65 137 338
40 % 65 137 356
30 % 65 137 368
Entity #33 | Chains: BW
ribosomal protein uS8 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 67 565
95 % 26 67 756
90 % 26 67 794
70 % 68 159 245
50 % 71 168 242
40 % 71 168 252
30 % 436 700 26
Entity #34 | Chains: BX
ribosomal protein uS12 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 65 594
95 % 26 69 739
90 % 26 70 759
70 % 69 164 238
50 % 69 169 237
40 % 69 169 249
30 % 69 169 265
Entity #35 | Chains: BY
ribosomal protein eS24 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 61 635
95 % 26 66 777
90 % 26 66 814
70 % 26 67 854
50 % 66 154 292
40 % 66 154 305
30 % 66 154 321
Entity #36 | Chains: Ba
ribosomal protein eS26 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 22 2615
95 % 15 25 2730
90 % 15 25 2805
70 % 15 25 2843
50 % 52 73 532
40 % 52 73 570
30 % 52 73 600
Entity #37 | Chains: Bb
ribosomal protein eS27 protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 66 572
95 % 26 66 783
90 % 26 66 824
70 % 65 140 276
50 % 68 152 279
40 % 68 152 299
30 % 68 152 311
Entity #38 | Chains: Be
ribosomal protein eS30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 36 1300
95 % 14 36 1725
90 % 18 45 1415
70 % 18 47 1399
50 % 77 147 367
40 % 77 147 387
30 % 77 147 398
Entity #39 | Chains: A3
5.8S ribosomal RNA rna, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Bw
E/E-site-tRNA rna, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #40 | Chains: A4
5S ribosomal RNA rna, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #41 | Chains: AA
ribosomal protein uL2 protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 58 770
95 % 22 58 1024
90 % 22 58 1058
70 % 69 141 287
50 % 70 154 294
40 % 137 224 204
30 % 137 224 211
Entity #42 | Chains: AB
ribosomal protein uL3 protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 2186
95 % 22 58 1037
90 % 22 58 1064
70 % 22 59 1082
50 % 71 164 259
40 % 71 164 273
30 % 71 166 280
Entity #43 | Chains: AC
ribosomal protein uL4 protein, length: 363 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 6985
95 % 15 31 2143
90 % 15 31 2205
70 % 15 31 2269
50 % 63 129 357
40 % 70 164 271
30 % 70 164 289
Entity #44 | Chains: AD
ribosomal protein uL18 protein, length: 294 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 2139
95 % 22 58 1038
90 % 22 58 1065
70 % 22 58 1099
50 % 70 150 312
40 % 70 150 323
30 % 70 150 339
Entity #45 | Chains: AE
ribosomal protein eL6 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 21646
95 % 4 4 21259
90 % 4 4 20090
70 % 4 4 18570
50 % 4 4 15812
40 % 52 92 471
30 % 52 92 496
Entity #46 | Chains: AF
ribosomal protein uL30 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 32 1558
95 % 22 58 1043
90 % 22 58 1069
70 % 22 58 1101
50 % 70 153 302
40 % 70 153 313
30 % 70 152 328
Entity #47 | Chains: AG
ribosomal protein eL8 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 7435
95 % 14 42 1479
90 % 14 42 1517
70 % 14 42 1550
50 % 65 138 346
40 % 65 140 359
30 % 65 140 369
Entity #48 | Chains: AH
ribosomal protein uL6 protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 34 1439
95 % 22 58 1039
90 % 22 58 1066
70 % 22 58 1100
50 % 70 160 278
40 % 71 162 281
30 % 138 232 206
Entity #49 | Chains: AI
ribosomal protein uL16 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39056
95 % 18 41 1532
90 % 22 58 1054
70 % 22 66 942
50 % 66 145 321
40 % 66 145 335
30 % 66 145 349
Entity #5 | Chains: B1
18S ribosomal RNA rna, length: 1708 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #50 | Chains: AJ
ribosomal protein uL5 protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 51 886
95 % 23 59 1001
90 % 23 59 1041
70 % 71 153 263
50 % 72 156 283
40 % 72 156 301
30 % 72 156 315
Entity #51 | Chains: AL
ribosomal protein eL13 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 2142
95 % 22 57 1062
90 % 22 57 1092
70 % 22 57 1117
50 % 68 143 336
40 % 69 150 327
30 % 69 150 340
Entity #52 | Chains: AM
ribosomal protein eL14 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 11 6858
95 % 15 21 3462
90 % 15 24 3108
70 % 15 24 3125
50 % 15 24 3063
40 % 15 25 2925
30 % 15 25 2840
Entity #53 | Chains: AN
ribosomal protein eL15 protein, length: 203 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 58 772
95 % 22 58 1025
90 % 22 58 1080
70 % 70 150 266
50 % 71 163 264
40 % 138 233 197
30 % 138 233 204
Entity #54 | Chains: AO
ribosomal protein uL13 protein, length: 195 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 2116
95 % 22 58 1056
90 % 22 58 1072
70 % 22 58 1104
50 % 70 152 305
40 % 70 153 310
30 % 70 153 325
Entity #55 | Chains: AP
ribosomal protein uL22 protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 24 2208
95 % 15 29 2298
90 % 15 29 2367
70 % 15 29 2409
50 % 70 162 265
40 % 70 162 279
30 % 70 162 296
Entity #56 | Chains: AQ
ribosomal protein eL18 protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 2140
95 % 22 58 1022
90 % 22 58 1055
70 % 22 59 1073
50 % 69 153 313
40 % 69 158 303
30 % 69 158 319
Entity #57 | Chains: AR
ribosomal protein eL19 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 58 781
95 % 22 58 1054
90 % 22 58 1079
70 % 22 59 1086
50 % 71 154 298
40 % 71 155 307
30 % 71 155 323
Entity #58 | Chains: AS
ribosomal protein eL20 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 2124
95 % 22 52 1186
90 % 22 52 1216
70 % 22 52 1238
50 % 68 143 335
40 % 69 144 342
30 % 69 145 353
Entity #59 | Chains: AT
ribosomal protein eL21 protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 57 791
95 % 22 58 1032
90 % 22 58 1060
70 % 22 59 1087
50 % 69 142 333
40 % 69 148 338
30 % 70 154 322
Entity #6 | Chains: BD
ribosomal protein uS3 protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 38 1084
95 % 26 62 854
90 % 26 62 897
70 % 26 63 922
50 % 68 143 322
40 % 68 143 337
30 % 68 143 351
Entity #60 | Chains: AU
ribosomal protein eL22 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 20 3104
95 % 15 25 2788
90 % 15 25 2856
70 % 15 25 2898
50 % 15 29 2480
40 % 28 48 1137
30 % 28 49 1148
Entity #61 | Chains: AV
ribosomal protein uL14 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 58 779
95 % 22 58 1020
90 % 22 58 1053
70 % 71 164 243
50 % 71 165 257
40 % 71 165 267
30 % 71 165 287
Entity #62 | Chains: AW
ribosomal protein eL24 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 10171
95 % 8 8 10424
90 % 8 8 10321
70 % 8 8 9975
50 % 8 8 9241
40 % 8 8 8800
30 % 8 8 8140
Entity #63 | Chains: AX
ribosomal protein uL23 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 24 2463
95 % 15 24 3063
90 % 15 24 3135
70 % 15 25 2897
50 % 28 45 1173
40 % 28 45 1201
30 % 28 45 1239
Entity #64 | Chains: AY
ribosomal protein uL24 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 58 775
95 % 22 58 1034
90 % 22 58 1062
70 % 5 6 13119
50 % 70 159 275
40 % 70 159 292
30 % 70 159 307
Entity #65 | Chains: AZ
ribosomal protein eL27 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 57 793
95 % 22 57 1066
90 % 22 57 1097
70 % 22 57 1121
50 % 68 138 347
40 % 69 151 322
30 % 69 152 336
Entity #66 | Chains: Aa
ribosomal protein uL15 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 2122
95 % 22 58 1050
90 % 22 58 1075
70 % 22 60 1052
50 % 70 155 293
40 % 70 155 306
30 % 70 157 314
Entity #67 | Chains: Ab
ribosomal protein eL29 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 15390
95 % 3 12 7163
90 % 3 12 6843
70 % 3 12 6731
50 % 3 12 6647
40 % 3 12 6437
30 % 3 12 5857
Entity #68 | Chains: Ac
ribosomal protein eL30 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 20 3051
95 % 15 24 3017
90 % 15 24 3084
70 % 23 64 990
50 % 73 161 266
40 % 73 161 280
30 % 73 161 297
Entity #69 | Chains: Ad
ribosomal protein eL31 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 24 2330
95 % 15 24 2936
90 % 15 24 3008
70 % 15 24 3028
50 % 70 152 304
40 % 70 152 314
30 % 70 152 327
Entity #7 | Chains: BF
ribosomal protein uS7 protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 67 558
95 % 26 67 757
90 % 26 67 795
70 % 27 76 721
50 % 69 161 249
40 % 69 161 262
30 % 69 161 278
Entity #70 | Chains: Ae
ribosomal protein eL32 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 58 777
95 % 22 58 1026
90 % 22 58 1057
70 % 22 59 1075
50 % 70 155 289
40 % 70 159 290
30 % 70 160 301
Entity #71 | Chains: Af
ribosomal protein eL33 protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 33 1488
95 % 22 57 1060
90 % 22 57 1098
70 % 22 57 1115
50 % 68 148 323
40 % 68 149 336
30 % 68 149 350
Entity #72 | Chains: Ag
ribosomal protein eL34 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 57 792
95 % 22 57 1070
90 % 22 57 1095
70 % 22 57 1119
50 % 68 137 348
40 % 68 137 367
30 % 68 137 377
Entity #73 | Chains: Ah
ribosomal protein uL29 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 26 2008
95 % 22 58 1051
90 % 22 58 1077
70 % 22 58 1107
50 % 69 154 309
40 % 70 165 268
30 % 70 166 283
Entity #74 | Chains: Ai
ribosomal protein eL36 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 33 1480
95 % 22 57 1076
90 % 22 57 1105
70 % 22 57 1127
50 % 22 59 1108
40 % 69 145 340
30 % 69 145 356
Entity #75 | Chains: Aj
ribosomal protein eL37 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 21 2800
95 % 15 28 2491
90 % 15 28 2553
70 % 15 28 2588
50 % 70 160 272
40 % 70 160 289
30 % 70 160 304
Entity #76 | Chains: Ak
ribosomal protein eL38 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 57 786
95 % 22 57 1072
90 % 22 57 1102
70 % 22 60 1058
50 % 22 60 1098
40 % 22 60 1129
30 % 22 60 1175
Entity #77 | Chains: Al
ribosomal protein eL39 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 40 1188
95 % 22 58 1018
90 % 22 58 1082
70 % 69 143 279
50 % 70 156 285
40 % 70 158 295
30 % 70 158 309
Entity #78 | Chains: Am
ribosomal protein eL40 protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 27 1973
95 % 15 27 2513
90 % 15 28 2491
70 % 53 80 457
50 % 53 80 499
40 % 53 80 536
30 % 53 80 560
Entity #79 | Chains: An
ribosomal protein eL41 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 60 651
95 % 23 63 839
90 % 23 63 882
70 % 63 132 298
50 % 63 132 349
40 % 63 132 368
30 % 63 132 380
Entity #8 | Chains: BK
ribosomal protein eS10 protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 22 2678
95 % 15 22 3355
90 % 15 22 3354
70 % 15 22 3348
50 % 15 23 3208
40 % 15 23 3199
30 % 15 23 3127
Entity #80 | Chains: Ao
ribosomal protein eL42 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 58 782
95 % 22 58 1016
90 % 22 58 1051
70 % 69 139 291
50 % 70 150 314
40 % 70 151 320
30 % 70 151 335
Entity #81 | Chains: Ap
ribosomal protein eL43 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 58 778
95 % 22 58 1049
90 % 22 58 1074
70 % 22 61 1018
50 % 70 151 307
40 % 70 151 318
30 % 92 174 269
Entity #82 | Chains: At
ribosomal protein eL28 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 2118
95 % 22 57 1064
90 % 22 57 1094
70 % 22 57 1118
50 % 22 57 1161
40 % 22 58 1166
30 % 22 60 1168
Entity #83 | Chains: Au
ribosomal protein uL1 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 22 2680
95 % 13 22 3365
90 % 13 22 3438
70 % 13 23 3256
50 % 14 51 1267
40 % 14 51 1315
30 % 14 51 1346
Entity #84 | Chains: Aq
ribosomal protein uL11 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 32 1572
95 % 9 32 2041
90 % 9 32 2118
70 % 11 47 1415
50 % 16 57 1159
40 % 16 57 1192
30 % 16 57 1232
Entity #85 | Chains: AK
ribosomal protein uL10 protein, length: 202 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 12386
95 % 5 16 4890
90 % 5 16 4754
70 % 5 16 4875
50 % 5 20 3695
40 % 11 29 2465
30 % 11 29 2496
Entity #86 | Chains: Ct
eukaryotic elongation factor 2 (eEF2) protein, length: 853 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 33452
95 % 5 8 11294
90 % 5 8 11205
70 % 5 9 9077
50 % 18 37 1215
40 % 18 37 1255
30 % 18 37 1288
Entity #9 | Chains: BM
ribosomal protein eS12 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 47 884
95 % 21 59 917
90 % 21 59 943
70 % 26 64 888
50 % 26 65 909
40 % 26 65 953
30 % 26 65 985

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures