Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 55102
95 % 2 2 41394 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 39401
70 % 2 2 34919
50 % 2 2 30366
40 % 22 32 1390
30 % 27 39 1185
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64529
95 % 1 1 58098
90 % 309 528 4
70 % 1483 2351 2
50 % 1854 2982 2
40 % 1854 2982 2
30 % 3764 6051 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 82896
95 % 1 1 58097
90 % 1 1 54798
70 % 1792 2882 1
50 % 1887 3027 1
40 % 1887 3027 1
30 % 3765 6051 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 82898
95 % 2 2 34916 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 33373
70 % 1793 2882 1
50 % 1888 3027 1
40 % 1888 3027 1
30 % 3766 6051 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 55103
95 % 9 10 5460 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 310 528 4
70 % 1484 2351 2
50 % 1855 2982 2
40 % 1855 2982 2
30 % 3767 6051 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1OLL 1 A NK RECEPTOR EXTRACELLULAR DOMAIN, RESIDUES 25-212 9606
2 6IAP 1 A Natural cytotoxicity triggering receptor 1 9606