Sequence Similarity Clusters for the Entities in PDB 6IAP

Entity #1 | Chains: A
Natural cytotoxicity triggering receptor 1 protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 50157
95 % 2 2 42075 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 31971
70 % 2 2 35507
50 % 2 2 30827
40 % 22 32 1422
30 % 27 39 1215
Entity #2 | Chains: D
Fab NKp46-4 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71586
95 % 1 1 44112
90 % 459 784 2
70 % 1509 2399 2
50 % 1888 3045 2
40 % 1888 3045 2
30 % 3839 6183 1
Entity #3 | Chains: E
Fab NKp46-4 heavy chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71585
95 % 1 1 59017
90 % 1 1 55645
70 % 1825 2943 1
50 % 1926 3094 1
40 % 1926 3094 1
30 % 3840 6183 1
Entity #4 | Chains: H
Fab NKp46-1 heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71588
95 % 2 2 42448 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 2 2 40497
70 % 1826 2943 1
50 % 1927 3094 1
40 % 1927 3094 1
30 % 3841 6183 1
Entity #5 | Chains: L
Fab NKp46-1 light chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 57729
95 % 9 10 5390 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 460 784 2
70 % 1510 2399 2
50 % 1889 3045 2
40 % 1889 3045 2
30 % 3842 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1OLL 1 A NK RECEPTOR EXTRACELLULAR DOMAIN, RESIDUES 25-212 9606
2 6IAP 1 A Natural cytotoxicity triggering receptor 1 9606